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Domain assignment for LOC_Os04g07320.1|13104.m00649|protein from Oryza sativa ssp. japonica 5.0

Domain architecture


Domain assignment details

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Strong hits

Sequence:  LOC_Os04g07320.1|13104.m00649|protein
Domain Number 1 Region: 694-1123
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 2.56e-174
Family Reverse transcriptase 0.000019
Further Details:      
 
Domain Number 2 Region: 1296-1455
Classification Level Classification E-value
Superfamily Ribonuclease H-like 2.02e-43
Family Retroviral integrase, catalytic domain 0.01
Further Details:      
 
Domain Number 3 Region: 548-655
Classification Level Classification E-value
Superfamily Acid proteases 0.00000000000312
Family Retroviral protease (retropepsin) 0.033
Further Details:      
 
Domain Number 4 Region: 487-522
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00000000436
Family Retrovirus zinc finger-like domains 0.0034
Further Details:      
 
Domain Number 5 Region: 1567-1646
Classification Level Classification E-value
Superfamily Chromo domain-like 0.00000167
Family Chromo domain 0.014
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) LOC_Os04g07320.1|13104.m00649|protein
Sequence length 1664
Comment retrotransposon protein, putative, Ty3-gypsy subclass
Sequence
MRVHTHMPRYKPEYLFGVEGFVQELRTMSFVIGFGTAPFYAQIPHDRHEEKCRVKVTLNR
GARIAIGELRDRYSDQLADTEYRYHPRQPQGSDRGSYLETEGIENDATTRHLVEMLWAMD
ETRAETVLAAQDREDRNRGKICKLEDKVVRLKKELAALKGEAPPQKARIHLTARKRALFV
PRYQLAPKMVLTRSNGNGPNNNNNNNNNNNGENPTLAQVLAQQAQLMNMMMQQLQNQQNQ
GNNHAPPQNKLAEFLRVRPPTFSSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQL
HGPASEWWDHFRLNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEY
LHEFNRLARYTPEDVRTDEERQEKFLEGLNDELSYPLMTGDYPDFQKLVDKTIRQEDKYN
RMEQKKRRIAHFKAQQGNSQRPRLTLGPQSRPQGGSSSVVRPQRQFFNNNAGNNIRNQAP
RPVAASTQQQPAKREQGSKPVVCFNCGDPGHYADKCPKPRRVKVVPVQSNSTTPASKARV
NHVAAAEAQDAPDVILCKFLVNLVPATVLFASGATHSFLSMSFAGNHGMEVEDLRRPLMV
STPSNQALSLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKV
TLTSNDGRVVTIHALSSESLRSRLNQITLEEIPIVREYLDVFPDDLPGMPPKRDIEFRID
LVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHNQRMC
VDYRALNDVTIKNKYPLSRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR
YGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLA
LEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSF
LGLAGYYRRFIENFSKIAKPMTWLLQKDVKYKWSEKCEQSFQELKNRLISAPILILPDPK
KGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLELPAVVHALKIWRHYL
FGTRTEVYTDHKSLKYIFTQPDLNTRQRRWLELIKDYDMGIHYHPGKANVVADAHSRKDY
CNATEGRQLPLELCKEFERLNLGIVSRGFVAALEAKPTLIDQVREAQINDPDIQEIKKNM
RRGKAIGFLEDEQGTVWLGERICVPDNKDLKDAILKEAHDTLYSIHPGSTKMYQDLKERF
WWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSG
HDSIWVIVDRLTKVAHFIPVKTTYSGNRLAELYMARIVCLHGVPKKIVSDRGSQFTSKFW
KKLQEEMGSKLNFSTAYHSQTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNN
SYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGMDILMEAEEKVKIIQERLRVAQSRH
KSYADNRRRDLSFEEGAYVYLRVTPLRGVHRFHTKGKLAPHFVGPYKVVSRRGEVAYQLE
LPQSLAGVHNVFHVSQLKKCLRVPTEEANLEQIEVQEDLTYIEKPIRILEIDERRTRNRV
IRFCKVQWSNHSEEESTWEREDELKSAHPHPFASSSEFRGRDSV
Download sequence
Identical sequences LOC_Os04g07320.1|PACid:21893796 39947.LOC_Os04g07320.1 LOC_Os04g07320.1|13104.m00649|protein

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