The results are sorted from lowest E-value to highest E-value. Strong classifications have a low E-value. Weak classifications have an E-value greater than 0.0001. Weak hits are shown in gray. Weak hits are not shown on the domain architecture.
The family level classification is conditional on the domain being a member of the specified superfamily. There is a possibility that the selected domain is a member of a sub-family for which no structure has yet been solved.
| Sequence: |
LOC_Os04g48094.1|13104.m04892|protein |
| Domain Number 1 |
Region: 724-1153 |
| Classification Level |
Classification |
E-value |
| Superfamily |
DNA/RNA polymerases |
1.89e-175 |
| Family |
Reverse transcriptase |
0.0000137 |
| Further Details: |
|
| |
| Domain Number 2 |
Region: 2180-2518,2617-2693 |
| Classification Level |
Classification |
E-value |
| Superfamily |
DNA/RNA polymerases |
6.14e-116 |
| Family |
Reverse transcriptase |
0.0021 |
| Further Details: |
|
| |
| Domain Number 3 |
Region: 1325-1484 |
| Classification Level |
Classification |
E-value |
| Superfamily |
Ribonuclease H-like |
9.74e-45 |
| Family |
Retroviral integrase, catalytic domain |
0.011 |
| Further Details: |
|
| |
| Domain Number 4 |
Region: 3033-3188 |
| Classification Level |
Classification |
E-value |
| Superfamily |
Ribonuclease H-like |
2.15e-40 |
| Family |
Retroviral integrase, catalytic domain |
0.007 |
| Further Details: |
|
| |
| Domain Number 5 |
Region: 2742-2849 |
| Classification Level |
Classification |
E-value |
| Superfamily |
Ribonuclease H-like |
1.18e-17 |
| Family |
Ribonuclease H |
0.009 |
| Further Details: |
|
| |
| Domain Number 6 |
Region: 566-671 |
| Classification Level |
Classification |
E-value |
| Superfamily |
Acid proteases |
0.00000000000000229 |
| Family |
Retroviral protease (retropepsin) |
0.029 |
| Further Details: |
|
| |
| Domain Number 7 |
Region: 510-551 |
| Classification Level |
Classification |
E-value |
| Superfamily |
Retrovirus zinc finger-like domains |
0.00000000174 |
| Family |
Retrovirus zinc finger-like domains |
0.004 |
| Further Details: |
|
| |
The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by 
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Information Content (IC) is an information theoretic score measured in bits of how informative it is to assign a given ontological term to a domain archtecture. The higher the score the more informative it is to talk about the term given the domain architecture.
H-score (hypergeometric score) indicates the strength of assigning an ontological term to this domain architecture. Assignments with higher scores are of a better quality. Details for the methodology be found on the dcGO website.
| Cellular Component |
IC (bits) |
H-Score |
| Biological Process |
IC (bits) |
H-Score |
| Molecular Function |
IC (bits) |
H-Score |
