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Domain assignment for LOC_Os04g55140.1|13104.m05712|protein from Oryza sativa ssp. japonica 5.0

Domain architecture


Domain assignment details

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Strong hits

Sequence:  LOC_Os04g55140.1|13104.m05712|protein
Domain Number 1 Region: 488-646
Classification Level Classification E-value
Superfamily Ribonuclease H-like 1.9e-44
Family Retroviral integrase, catalytic domain 0.0024
Further Details:      
 
Weak hits

Sequence:  LOC_Os04g55140.1|13104.m05712|protein
Domain Number - Region: 792-919,952-1136
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 0.00623
Family Reverse transcriptase 0.021
Further Details:      
 
Domain Number - Region: 217-255
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0419
Family Retrovirus zinc finger-like domains 0.0078
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) LOC_Os04g55140.1|13104.m05712|protein
Sequence length 1181
Comment retrotransposon protein, putative, Ty1-copia subclass
Sequence
MTSLKYDLPLLDRDTRFSLWQVKMRAVLAQQELDDALSGFDKRTQDWSNDEKKRDRKAMS
YIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDH
LSAFKEIVADLESMEVKYDEKDLALILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHA
KEKMKKMVPSEGSNSQAEGLVVRGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYKSCKYCK
RDGHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQW
ILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVR
HIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQGTTILGNV
ATVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKFCEHCIFGKHKRVK
FNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFNVF
KEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMN
RIIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYANKKTPIEVWSGSPANYSDLKV
FGCTAYAHVDNGKLEPRAIKCIFLGYPSSVKGYKLWCPETKKVVISRNVVFHESIMLHDK
PSTNVPVESQEKASVQVEHLINSGHAPEKEDVAINQDAPVIEDSDSSTVQQSPKRSIAKD
KPKRNKELEKNHTWELVKLPKEKKHIRCKWIFKRKEGMSPSDEARYKASIVAMHDYELEQ
MDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRDSKLKAQLSSEFEMKDLGVAKKILG
MEITRERHSDKLYLSQKGYIEKVFRRFNMHDAKPVSTPLAAHFRLSSDLCPQSDYNIEYM
SRVPYSSAVGSLMYAMICSRPDLSHALSVVSRYMANPGKEHWKDVQWIFRYLHGTSSACL
QFGRSRDGLVGYVDSDFAGDLDRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEAEYMA
ISEACKEAIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKHIDVRYHFIRGV
IAEGDVKVCKISTHDNPADMMTKPVPATKFELCSSLVGVTV
Download sequence
Identical sequences Q7XTM9
39947.LOC_Os04g55140.1 LOC_Os04g55140.1|PACid:21892809 LOC_Os04g55140.1|13104.m05712|protein

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