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Domain assignment for LOC_Os05g41330.1|13105.m04385|protein from Oryza sativa ssp. japonica 5.0

Domain architecture


Domain assignment details

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Strong hits

Sequence:  LOC_Os05g41330.1|13105.m04385|protein
Domain Number 1 Region: 592-1021
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 3.22e-175
Family Reverse transcriptase 0.0000139
Further Details:      
 
Domain Number 2 Region: 1193-1352
Classification Level Classification E-value
Superfamily Ribonuclease H-like 7.97e-45
Family Retroviral integrase, catalytic domain 0.011
Further Details:      
 
Domain Number 3 Region: 432-539
Classification Level Classification E-value
Superfamily Acid proteases 4.88e-18
Family Retroviral protease (retropepsin) 0.023
Further Details:      
 
Domain Number 4 Region: 383-420
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.000000244
Family Retrovirus zinc finger-like domains 0.0036
Further Details:      
 
Domain Number 5 Region: 1465-1544
Classification Level Classification E-value
Superfamily Chromo domain-like 0.00000852
Family Chromo domain 0.015
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) LOC_Os05g41330.1|13105.m04385|protein
Sequence length 1562
Comment retrotransposon protein, putative, Ty3-gypsy subclass
Sequence
MAVKDRFTGNPGRLTVLSTSGSGFDACGLVGGRYHVSVMETRNGSRDSNNASGSEKPING
ARANSASDNSPSPPPENPTIAQVLDNQTQMMTMMMQQMQQQYHQVLQQVQQQAQLQQQNL
QFGSPPPQSKLLEFLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLLQCNEQEKVAFATHQL
QGPASIWWDNYMVTRPAGAEVTWTEFRHSFNKAQVPEGIVAQKKREFRSLQQGTRTVIEY
LHEFNLLARYAPEDVRTDAERQEKFLSGLDDELTNQLISRDYEDFEKLVDKAIRQEEHCN
KINRKRKAAQFRTPQGKSQKPRFTMGRHGGPSTMIIRQHRPYHPGSFNKNHHNGSHNNSE
QHSLNPTPSSLKIPAQSVQPALPEQPKRLGEKPELCFNCNKPGHTVGKCPKPRRAGPKFV
QARVNHASAEEAQSAPEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKI
PMRVHTPGGGMTTTHYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWLTRHRGVIDCA
SRTIKLTNAKGEVVTFQSLVPRKPGISLNQAAGEEQEVAVEKTTKKLEDIPIVREYPEVF
PDDLTTMPPKRDIEFRIDLVPGTAPIHKRPYRMGASELAEVKKQVDEQLQKGYIRPSTSP
WGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGVTVFSKIDLRSGY
HQLRIREEDIPKTAFITRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVVVFIDD
ILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLKEVQFLGHIVNAQGVAVDPANV
ESVTKWTPPRTVTQVRSFLGLAGYYRRFIENFSKIAKPMTQLLKKEEKFIWSAECNRSFE
ELKRRLVSAPVLILPDQTKDFQVYCDASRQGLGCVLMQDGKVVSYASRQLRPHEGNYPTH
DLELAAVVHALKIWRHYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMGIH
YHPGKANVVADALSRKSYCNVAWVEQLCGEVQRDLEHLNLGIVEHGFVAALEAQPTLVEQ
VRIAQASDPEIAELKKNMRVGKARGFVEDEQGTIWMGERLCVPENKELKDLILTEAHQTQ
YSIHPGSTKMYQDLKEKFWWVSMRREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWK
WEEIGMDFITGLPRTSSGHDSIWVVVDRLTKVAHFIPVHTTYSGKKLAELYLSRIMCLHG
VPKKIVSDRGSQFTSKFWQKLQEELGTRLNFSTAYHPQTDGQTERVNQILEDMLRACALD
FGGAWDKSLPYAEFSYNNSYQASLQMAPFEALYGRRCRTPLFWDQTGERQLFGTEVLNEA
EEKVRAVRERLRIAQSRQKSYADNRRRELVFQVGDYVYLRVTPLRGVHRFQTKGKLAPRF
VGPYRILERRGEVAYQLELPSNMLGIHNVFHVSQLKKCLRVPEEQASPDQIEIQEDLTYV
EKPTRILETSERKTRNKVIRFCKVQWSHHSEEEATWEREDELKATHPHLFASSSESRGRD
SV
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Identical sequences 39947.LOC_Os05g41330.1 LOC_Os05g41330.1|13105.m04385|protein LOC_Os05g41330.1|PACid:21941441

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