SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for LOC_Os07g17260.2|13107.m01810|protein from Oryza sativa ssp. japonica 5.0

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  LOC_Os07g17260.2|13107.m01810|protein
Domain Number 1 Region: 996-1193,1221-1406
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 5.78e-26
Family Reverse transcriptase 0.051
Further Details:      
 
Domain Number 2 Region: 434-472
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00000401
Family Retrovirus zinc finger-like domains 0.0041
Further Details:      
 
Weak hits

Sequence:  LOC_Os07g17260.2|13107.m01810|protein
Domain Number - Region: 711-755
Classification Level Classification E-value
Superfamily Ribonuclease H-like 0.00341
Family Retroviral integrase, catalytic domain 0.034
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) LOC_Os07g17260.2|13107.m01810|protein
Sequence length 1460
Comment retrotransposon protein, putative, unclassified, expressed
Sequence
MHSKKGKDPMLLNHRYHVKELPNGKIPINPKCVNIVFGIPRTGVTIKPNNPKHEFIKILK
HLFRVSSGTQISVQQLQVHLKEIIAPTTSNQPSMQYANVCLDVNNIAKYNWAEDMLSTIR
NAVLQLLYLDYIDASGCNVPWGEPRVAFWTDQAAKPLKNADMGSGLYAVYGSCKDSIYSL
SIFSVTRTAAVEVETLRSSINGSIAGDITADKELEELARGRARERAERWAAAHLHGGGGG
GGPRDRAPADGNPDGRGRAGGIPEPARGPRRQRGSLSPDRRHGHHGVQTVVRDFGPGGGW
PTLTKTNYIEWDAVMRVRLQVRHMWEAVWYGDVDYDDDRRALDALIAAVPPEMQFSLFQK
RIAKEAWDAIAAARIGSDRARKSTLQALRKEWDNLAFKPGEDVDDFSLRLNTLAEDGVQL
RWARRRAEGGARRGAQGGATGNHKPARDDACRNCGKLGHWAKDRRQPRRGQAHVARVEEE
PALLLAHASIELPPAAPAAAAFLHLDEPKVLVSLCNGSSNNKADGWYLNTGATHHMTGRR
EFFTEFDSSVRGSVKFGDASGVEIKGVGSVTFTAKSGEHRLLTGVYYIPALRNSIISVGQ
LNENGSHVLVEDGLMRIWNRRRRLLAKVTRGTNRLYILSAQVAQPVCLAARRDDEAWQWH
ERFGHLHFEALKRLSAKEMVRDMPSLDHVEQLCDVSVVTKQRRLPFPQQTSFRAKERLKL
VHGDLCGPVTPATPGGRRYFLLLVDDLSCYMWVTPSGACRLLQRRSAAASCACCAPTTAA
NSRRLNSRRTTLMRAFSATTPRPRDVVFDEGRGWVWDKVVDDGSTPTYDDFTIKYVHFEG
ARGVGSSSSPSVSTPVPEPPSTPTPTHSRAMTSTTTSSSPTPPQPATPRAPAPTATPPST
STPTPARVERSSVEFATLLSHDGERIDAYHDGEQLRYRTMKDLLGDQPVPGLVPRDLEAQ
LHLACDDGEPRSFTEAEKHAAWRAAMQSEIDAVQENRTWELADLPRGHRAITLKWVFKLK
RDEAKAIVKHKARLVERGFVQQEGIDYDDAFAPVAQMESVRLLALAAQEGWGVHHMDAKS
VFLNDDLKEEVYVHQPPGFVIPGKKGKVLRLHKALYGLRQAPRAWNAKLDSTLKGMGFEQ
MEEMPCWWDVEVAAFKEEMKATFQMSDLGPLSSYLGIEVHQDDSRITLRQTAYAKRIVEL
ARLTDCNPALTPMEERLKLNRNSMTEEVDATQYQRLVGSLRYLTHTRPDLAFSVGYVSRF
MQRPTTEHQQAVKRIIRYVAGTLDHGLYYPRCPGKAHFVGYSDSDHAGDIDTSKSTSGIL
FFLGECLVSWQSVKQQVVALSSCEAEYMAASAASTQALWLARLLSDLLGRDTGAVELRVD
SKSALALAKNPVFHERSKHIRVRYHFIRSYLEEGSIKASYINTKDQLADLLTKPLGRIKF
LKRCSRIGMAQLPHKTTHKT
Download sequence
Identical sequences LOC_Os07g17260.1|13107.m01809|protein LOC_Os07g17260.2|13107.m01810|protein 39947.LOC_Os07g17260.2 LOC_Os07g17260.1|PACid:21900206 LOC_Os07g17260.2|PACid:21900207

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]