SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for LOC_Os08g24380.1|13108.m02500|protein from Oryza sativa ssp. japonica 5.0

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  LOC_Os08g24380.1|13108.m02500|protein
Domain Number 1 Region: 207-414
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 7.89e-36
Family RecA protein-like (ATPase-domain) 0.069
Further Details:      
 
Domain Number 2 Region: 476-904
Classification Level Classification E-value
Superfamily L domain-like 6.12e-24
Family Rab geranylgeranyltransferase alpha-subunit, C-terminal domain 0.06
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) LOC_Os08g24380.1|13108.m02500|protein
Sequence length 930
Comment NB-ARC domain containing protein, expressed
Sequence
MELGAWELDSMAPGAHASLNSDQEETSSEYVTTIKRGRSNPRQLQALMVNASSLKVLQHL
QPSPFSEKLVGILREEFVKTLFVRRDIRRLRESLKYFDSVREDADALALENRVTGTWWSD
VKDVMYDVDDIVDFLRAHSYKQRCCDRVLFSRLAQLPLDYRIARRIKYVNERLVQITMNS
KMFVPLAMRSPQTLQRNGVSRYVAALVDELDVVGREIKETTDDMVQMIIGCGHQSTISVY
GILGMGGIGKTTLAQKIYNDRRIRERFHHVLIWLSISESISETDLLKEAIEKAGGQSYQG
KSKDQLLQALLNCITGQSIFLVLDNMTSSHIWIDLLRSPIERCADAHIVKKCDGLPLAIK
AVAGVLSSKATKEEWARVLESRWCYEGLPEEIQGPLYLSYNDLSPQLKSCFLWCALMPQN
FHIHRDVTYFWIAEGFVKKEGSRPIQEVAEDYYHELIMRNLLQARPEYIDKGISTMHDLL
RLLGQYLTRDVAVFMDEDETPPNVRRLAVGNAVEEIPGIQDQKNLRCLLVYHHDACRSVK
RDIYRKLEHLRILILVGAGLQSIPESVGHLVLLRLLDVSCNEEIKQLPGSIGNLTCLEHL
SVSGCEKLASLPASLMTLSTISFLNIVFQDGTGGFRLDELDSLSKIRRLLLIKLEKASPP
ASPVLCNKRHLKELGLTCTMGEEADCRTSYEDSEVKNIEEIYNKLCPSRKLQYIFIDGFP
ELPPAGQLPMLQVLHVKGADAVVSIGHELFGKGVVSPTHTIIFPKLELLEIVDMYNWQSW
SVSTESLSDGTSETISRSVFLMPCIRYLQLINCPKLRALPEDLHRIVNLRRVLIEGVHSL
QEIVYHPGIVWLKVKNNKSLRRISNLSKLQLLLAQDCSELQQAEELSSLKTLYMVDCPME
QMFWDCFSKEQQSMMTHVVVGIRVGYDSIN
Download sequence
Identical sequences 39947.LOC_Os08g24380.1 LOC_Os08g24380.1|13108.m02500|protein

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]