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Domain assignment for LOC_Os09g08180.1|13109.m00676|protein from Oryza sativa ssp. japonica 5.0

Domain architecture


Domain assignment details

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Strong hits

Sequence:  LOC_Os09g08180.1|13109.m00676|protein
Domain Number 1 Region: 762-1121
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 2.22e-138
Family Reverse transcriptase 0.00006
Further Details:      
 
Domain Number 2 Region: 1540-1795
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 8.34e-68
Family Reverse transcriptase 0.018
Further Details:      
 
Domain Number 3 Region: 1241-1379
Classification Level Classification E-value
Superfamily Ribonuclease H-like 5.69e-38
Family Retroviral integrase, catalytic domain 0.011
Further Details:      
 
Domain Number 4 Region: 2082-2225
Classification Level Classification E-value
Superfamily Ribonuclease H-like 7.08e-34
Family Retroviral integrase, catalytic domain 0.0089
Further Details:      
 
Domain Number 5 Region: 1837-1959
Classification Level Classification E-value
Superfamily Ribonuclease H-like 7.02e-19
Family Ribonuclease H 0.01
Further Details:      
 
Domain Number 6 Region: 604-709
Classification Level Classification E-value
Superfamily Acid proteases 4.13e-16
Family Retroviral protease (retropepsin) 0.03
Further Details:      
 
Domain Number 7 Region: 552-589
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0000000015
Family Retrovirus zinc finger-like domains 0.0037
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) LOC_Os09g08180.1|13109.m00676|protein
Sequence length 2225
Comment retrotransposon protein, putative, Ty3-gypsy subclass
Sequence
MVEVLEEEEAVAFTPTPSGSGDSSESRGPRHHRRDSPTPPRHEPSRREDPTRSGGSALSP
PLGEERPRRVGARRRLTYGDGGSPRGTLQAAGALLRHPPVNSEPETPVQRWLDDVANLVT
TAQRQLAAGGRPAATGMSRTPVTLSSSARRRARQSAMASRRSTAPTSSGASGSRRRHDGL
YGEQDAQINIERRRDERRAARMGEGSSSSRVPGSSSRGGPPPTLTPGGTGCRAFVASLQN
VRWPLKFRPNLTEKEARLQGAQDHRRALQVGGQGGSEGGGVGNSPDTGAAAAATPESAPR
SKRRDRRGKRKPGRSDDEGHVLAADGPARAPRKGKATSDKPSSTAPSGEGRSADKWCSVH
NTYRHSLADCRSVKNLAERFRKADQEKRQGRREGKAPATSAGDQREEAKNKAPADDGGDS
EDLDFQVPQGTVATLDGGAYAHTSRRGFKAMRRELLAAVPTHEVARKARWSEKMDRKRKV
AQFRSNQGSHQRPRFTPGQQGGPTTLIVRQQRPFNANNFHQGASGSQNHHGGQPNRSAAP
RPPMAPAQTAPSAQAKKETGTKPGSCFNCGELGHFADKCPKPRRAGPRFVQARVNHASAE
EAQAAPEVVLGTFLVNSIPATVLFDSGATHSFISKKFVGMHGLIRGELSTPMRVHTPGNS
STSVQFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEK
GETVVYKSPISPKQGVSLNQIEVEIPVVTEEKNSRKLEEIPIVCEYPEVFPEDLTTMPPK
REIEFRIDLALGTAPIYKRPYRMAANELAEVKKQGAPVIFVEKKDKTKRMCIDYRALNEV
TIKNKYPLPRIDDLFDQLKGAKVFSKIDLLSGYHQLRIREEDIPKTAFTTRYGLYECTVM
SFGLTNAPAFFMNLMNNVFMEFLDKFVVVFIDDILIYSKFEEEHELHLRLLLEKLKEHQL
YAKFSKCDFWLSEVKFLGHVIAAQGVAVDPSNVESVTKWTPPKTVSQIRSFLGLVGYYRR
FIENFSRIARPMTQLLKKDEKIKWTAECDKSFEELKKKLVSTPVLILPDQMKDFQVYCDA
SHHGLRCVLMQEGRVVAYASWQLRPHEGNYPTHDLELAVVARPTLVDQVRAAQANDPEIA
KLKKNMRVGKARDFHEDEHGTIWLGERLCVPDDKELKDLILIEAHQTQYSIHPGSTKMYQ
DLKEKFWWVSMRREIAEFVALCDVCQRVKAEHQRPASLLQPLQIPEWKWEEIGMDFITGL
PRTSSGHDSIWVVVDRLTKVAHFIPVHTTYTGKRLAELYFSRIMCLHGVPKKIVSDRGSQ
FTSKFWQKLQEELGTRLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGAWDKSLPRL
RCAQGPGDEAPVVAADHWRDSETHVELPVTFGDSTNFRTERIDFDVADLNLPYNAVLGRP
TLVKFMATNHYAYLQMKMPGPAVPITVFGDVKVALACAEQRADNLAVATEPQAPEATASR
ASKKRLTSANEESALVSFLRANSNVFTWKPSDMPGVPREVIEHCLAVRPDARPIRQKVRH
QAPERQAFIREEVVRLLEADFICEVIHPEWLANPVVVPKANGKLRMCIDYTDLNKACPKD
PFPLPCIDQIVDSTVGCDLLCFLDAYSGYHQIRMAREDEEKPTFITPVGTFCYTTMPFGL
KNAGPTFQRMTRITLSNQIGRNVEAYVDDLVVQRPVYFVSEALRDAKTRYPQAQKMLYAV
LMASRKLRHYFQAHRVSVVTSYPLGQILHNQEGTGRVVKWAIELAEFDLHFKPRHAIKSQ
VLANFIAEWTPVDEPVPPNVSFLPRDVKDPNADIHGGHWVMHFDGSLNLQGAGARVTLTS
PSGDVLKYVIWLDFRATNNMAEYEGLLAGLRAVARMGIHRLLVLGDSQLVVNQVSKEYQC
TDPQMDAYVREVRRMEHHIDRLELRHVPRRDNTVADELSRVASARAPLPPGTFEERLAQP
SARPNPSRDPDDTPSAPTLGDSRPSGPEGVDPDPPHQVVWMTDIRAYLDGNTLPEDRAEA
EKLARISKRYVLIEGTLYRRAANGILLKCVSREQGIELIADTHQDILGPFKTARGGYQHL
YVAIDKFTKWPEAYPVVKIDKHSALKFIRGITSRFGVPNRIITDNGTQFTSELFDNYCDD
MGIKLCFASPAHPRSNGQVERANAEILKGLKTKTYNVLKKHGDSWLEELPAVLWANRTTP
SRATG
Download sequence
Identical sequences 39947.LOC_Os09g08180.1 LOC_Os09g08180.1|PACid:21927585 LOC_Os09g08180.1|13109.m00676|protein

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