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Domain assignment for LOC_Os09g23920.1|13109.m02266|protein from Oryza sativa ssp. japonica 5.0

Domain architecture


Domain assignment details

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Strong hits

Sequence:  LOC_Os09g23920.1|13109.m02266|protein
Domain Number 1 Region: 844-1273
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 4.56e-178
Family Reverse transcriptase 0.0000153
Further Details:      
 
Domain Number 2 Region: 1445-1605
Classification Level Classification E-value
Superfamily Ribonuclease H-like 6.45e-43
Family Retroviral integrase, catalytic domain 0.015
Further Details:      
 
Domain Number 3 Region: 700-804
Classification Level Classification E-value
Superfamily Acid proteases 0.0000000000000433
Family Retroviral protease (retropepsin) 0.026
Further Details:      
 
Domain Number 4 Region: 637-673
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0000000209
Family Retrovirus zinc finger-like domains 0.0046
Further Details:      
 
Domain Number 5 Region: 1717-1795
Classification Level Classification E-value
Superfamily Chromo domain-like 0.0000275
Family Chromo domain 0.013
Further Details:      
 
Weak hits

Sequence:  LOC_Os09g23920.1|13109.m02266|protein
Domain Number - Region: 343-348,445-450
Classification Level Classification E-value
Superfamily Formin homology 2 domain (FH2 domain) 0.0549
Family Formin homology 2 domain (FH2 domain) 0.06
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) LOC_Os09g23920.1|13109.m02266|protein
Sequence length 1814
Comment retrotransposon protein, putative, Ty3-gypsy subclass
Sequence
MRSSLKMKALVSSSCLPSSACGRRPSLPLFFVVFVCWAFAAHMAGSVTRRGLDMTGFVLE
LRGMCVVLGYPHGVDYQARPLPEQEGEDAEPHAGWEVTAVILSGSPERTSLAVTAGGDSF
PAACQNAALLAIGTLHQRYPDELQHSPYRYHPRRGGASDHATFRDASSEDDATVVHLARM
VEAYDAARIDFHQMVRRGMVENNLKILELRQENLQLKKDLDAVEAQLHQLKIAQGEICRP
KRRRVCRSQKITARKSTSRPELVRQSLAWTCFVETPRAEPAPVVPQEGEASGVGSSEVLI
VSSPSLFAGSVWGFQMVTTRRNVNTGEGNQPEGSNPNPQGNPPPPPPPDTNAILTQILAQ
QANMMNAFLHHLQNPPQQNAPPPPPQHSKLAEFLRIRPPTFSSSNNPVDALDWLHAVGKK
LDTVRCSDEEKVVFAAHQLQGPASLWWDHFQATQPEGQPITWARFTAAFRRTHVPAGVVA
LKKREFRELKQGNRSVMEYLHEFNNLARYAPEDVREDEEKQEKFLAGMDPELSVRLVSGD
YPDFQRLVDKSIRLEAKHKELESHKRRLANFRNQQGANQRVRYTNPYPGGTSSQQQQQQQ
PRPAPRPQFVVRVPQPQQQQNQQGTRAPRPPTPTVQPVQGRRDAQGPQRLCFNCFEPGHF
ADKCPKPRRQQGQAPPRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILF
DSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLI
LLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYRGPEQPVVFFAPPTSVRSSELHQIGLS
EIPIVREFGDVFPEELPGMPPKREIEFRIDLAPGTTPLHKRPYRMAANELAEVKKQLEEL
KEKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGA
TVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAPAFFMNLMNKVFME
YLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVI
SAKGVAVDPETVTAVTDWKQPKTVTQIRSFLGLAGYYRRFIENFSKIARPMTQLLKKEEK
FVWSPQCEKAFQTLKEKLVSSPVLILPNTRKDFMVYCDASRQGLGCVLMQDGHVVAYASR
QLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYIFTQSDLNLRQRRW
LELIKDYDVGIHYHPGKANVVADALSRKSHCNTLNVRGIPPELNQQMEALNLSIVGRGFL
AALEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGKRVCVPDSREL
KQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPA
GLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVIVDRLTKVARFIPVKTTYGGNKLA
ELYFARIVSLHGIPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQ
ILEDMLRACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLWDQVGE
SQVFGTDILREAEAKVRIIRDNLKVAQSRQKSYADNRRRDLEFAVDDFVYLRVTPLRGVH
RFQTKGKLAPRYVGPFRIIARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADS
EQIEVREDLTYVERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPG
LFASSSESRGRDSV
Download sequence
Identical sequences LOC_Os09g23920.1|PACid:21925729 39947.LOC_Os09g23920.1 LOC_Os09g23920.1|13109.m02266|protein

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