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Domain assignment for LOC_Os10g16720.1|13110.m01362|protein from Oryza sativa ssp. japonica 5.0

Domain architecture


Domain assignment details

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Strong hits

Sequence:  LOC_Os10g16720.1|13110.m01362|protein
Domain Number 1 Region: 744-1173
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 2.22e-179
Family Reverse transcriptase 0.0000105
Further Details:      
 
Domain Number 2 Region: 1345-1504
Classification Level Classification E-value
Superfamily Ribonuclease H-like 3.79e-44
Family Retroviral integrase, catalytic domain 0.011
Further Details:      
 
Domain Number 3 Region: 586-691
Classification Level Classification E-value
Superfamily Acid proteases 5.63e-16
Family Retroviral protease (retropepsin) 0.029
Further Details:      
 
Domain Number 4 Region: 530-571
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.000000000454
Family Retrovirus zinc finger-like domains 0.0037
Further Details:      
 
Domain Number 5 Region: 1616-1696
Classification Level Classification E-value
Superfamily Chromo domain-like 0.0000143
Family Chromo domain 0.015
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) LOC_Os10g16720.1|13110.m01362|protein
Sequence length 1714
Comment retrotransposon protein, putative, Ty3-gypsy subclass
Sequence
MAVEASGGTADHACQEAAYLMMARIRERHDYIFHDTAYRYHPRRAHGDGVSSFRPTAGEN
DTTFGHMCAVIRGLDRMHSDLHKATKALNDGKLMRIVALKDEIARLKKENAQLKGLPAPG
GVRIRTTPRKTTTAPVRIQLAPRNPPPPAAPAAPSVPPAVPAAPAPAPAFTLSFAPASAA
RGSASGTGGCLFGMVYTRNGSRATGEGSNGEERADGVHPNSDSGNGPPPLPENPTLAQVM
AHQTQMIAAMMQQMQQQHQQMHQRMMQHAEQQHQQFGPPPPQSKLPEFLRVRPPTFSSTT
NPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPGTEVTWAEF
CRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLARYAPEDVRTDAEKQEKFM
AGLDDELTNQLISGDYADFERLVDKAIRQEDQRNKMDRKRKAAQFRAHQGSHQRPRFTPG
QQGGPTTMIVRQHRPFNPSNFHQGTSGSQNHHGSQPNRGAAPRPSVAPAQSGQPAQAKKE
TGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQARVNHASAEEAQAAPEVVLGTFPVNSI
PATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSVQFSPSITIEIQRSP
FLANLILLESKDLDVILGMDWLTKFKGVIDCASRTVTLTNEKGETVVYKSLVSPKKGVSL
NQIETEIPVDTVEKNLRKLEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYK
RPYRMAANELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVT
IKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYECTVMS
FGLTNAPAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLY
AKFSKCDFWLTEVKFLGHVITAQGVAVDPSNVESVTKWTPPKTVSQIRSFLGLAGYYRRF
IENFSRIARPMTQLLKKDEKFKWTAECDKSFEELKKKLVSAPVLILPDPTKDFQVYCDAS
RHGLGCVLMQEGRVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEVYTD
HKSLKYIFTQPDLNLRQRRWLELIKDYDMSIHYHPGKANVVADALSRKSYCTALCVEGMC
EELRQEFEHLNVGIVEHGFVAALEARPTLVDQVRAAQVNDSEIAELKKNMRVGKARDFHE
DEHGTIWMGERLCVPNDKELKDLILTEAHQTQYSIHPGSTKMYQDLKEKFWWVSMRREIA
EFVALCDVCQRVKAEHQRPAGLLQPLQIPEWKWEEIGMDFITGLPRTSLGHDSIWVVVDR
LTKVAHFIPVHTTYTGKRLAELYLARIMCLHGVPKKIVSDRGSQFTSKFWQKLQEELGTR
LNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGAWDKSLPYAEFSYNNSYQASLQMAP
FEALYGRKCRTPLFWDQTGERQLFGTEVLAEAEEKVRIIRERLRIAQSRQKSYADNRRRE
LTFEAGDYVYLRVTPLRGVHRFQTKGKLAPRFVGPYKILERRGEVAYQLELPSNMIGIHD
VFHVSQLKKCLRVPEEQADSEHIDIQEDLTYVEKPVRILDTSERRTRNKVTRFCRVQWSH
HSEEEATWEREDELKAAHPHLFTSSSESRGRDSV
Download sequence
Identical sequences Q94HT9
LOC_Os10g16720.1|PACid:21884053 39947.LOC_Os10g16720.1 LOC_Os10g16720.1|13110.m01362|protein

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