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Domain assignment for LOC_Os12g28940.1|13112.m02939|protein from Oryza sativa ssp. japonica 5.0

Domain architecture


Domain assignment details

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Strong hits

Sequence:  LOC_Os12g28940.1|13112.m02939|protein
Domain Number 1 Region: 283-323
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0000000984
Family Retrovirus zinc finger-like domains 0.0048
Further Details:      
 
Domain Number 2 Region: 97-122
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.000000124
Family Retrovirus zinc finger-like domains 0.0046
Further Details:      
 
Weak hits

Sequence:  LOC_Os12g28940.1|13112.m02939|protein
Domain Number - Region: 186-225
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.000136
Family Retrovirus zinc finger-like domains 0.0047
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) LOC_Os12g28940.1|13112.m02939|protein
Sequence length 660
Comment retrotransposon protein, putative, unclassified
Sequence
MADNEKGNKVRSQDIGTSSSRVNEAPDTSCVAVVQHLINQNKLLIEILQQHRMPILNPSR
MQPQVQLEAVQALTPQVSAPPTSQKAPHAMPHVDPKEASIICFMCDEQGHYARNCPQQKR
KAPMRTEDEVRKMIITSTEWPPPGMTRRQRRNTFRGAPQLTEHLLANGGRVSDSEDSDQV
SSDDEDEMERKACSRCGEIGHVASSCATICVHCEEDHPPDRCPTSRITCFFCEGTDHVPK
DCQFSFLLTKKMANQPASSNGEKHQGNTNPRQDYSSSLTPVPGQRNRNEKRKCRVREDIC
CFNCQGMGHFADKCPKPRNIAAGTTVHATPCNQKLAPQRIVIHASRSSPIARVATAPIPM
NALPQGVNAQFQPQPPADKTEASICVVPLEVPIQQLRNQVQDEEPECIRKGSKVIWQKNN
MDAPHLEEALNPSGIDTDSKQCISLKAASQRTSSSPEASAIHIKEYHLLEISRKMIDKKR
LAKMFSSMKEVGRKVIDKQKHALHRSRKTPDCNCPATVTLSLSQQDDLGKSVSMKAKSEI
FHSVSDATRSEKCKHRLPGDATSWEMIQRERTHQVDNLSEVDSEDMNHEKFWNGSITELP
QPSLSQPKGAPWSKSGEEKIPSATGGQAKQFRVVKFCWKFVKTQRKKSDKKRRPPNLSSC
Download sequence
Identical sequences Q2QR23
39947.LOC_Os12g28940.1 39947.LOC_Os12g29060.1 LOC_Os12g28940.1|PACid:21936557 LOC_Os12g29060.1|PACid:21936125 LOC_Os12g28940.1|13112.m02939|protein LOC_Os12g29060.1|13112.m02951|protein

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