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Domain assignment for LOC_Os12g38030.1|13112.m03918|protein from Oryza sativa ssp. japonica 5.0

Domain architecture


Domain assignment details

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Strong hits

Sequence:  LOC_Os12g38030.1|13112.m03918|protein
Domain Number 1 Region: 892-1321
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 3e-173
Family Reverse transcriptase 0.0000105
Further Details:      
 
Domain Number 2 Region: 1493-1650
Classification Level Classification E-value
Superfamily Ribonuclease H-like 1.05e-43
Family Retroviral integrase, catalytic domain 0.012
Further Details:      
 
Domain Number 3 Region: 743-849
Classification Level Classification E-value
Superfamily Acid proteases 0.00000000000000248
Family Retroviral protease (retropepsin) 0.037
Further Details:      
 
Domain Number 4 Region: 657-694
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0000000297
Family Retrovirus zinc finger-like domains 0.0045
Further Details:      
 
Domain Number 5 Region: 1765-1843
Classification Level Classification E-value
Superfamily Chromo domain-like 0.00000393
Family Chromo domain 0.015
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) LOC_Os12g38030.1|13112.m03918|protein
Sequence length 1851
Comment retrotransposon protein, putative, Ty3-gypsy subclass
Sequence
MAVNASFSSHGFGEGHHVAQLRDLARFLGFSCPEYTGYSVDRVPPHCELSVYLYPRGGIH
GVGLRPHHFTVARPTLQIAYQDLSWTALRRLAHDYSHRLGGSAFRQLPRLPSGHSDARYP
CPYSESQPVLTRMVELSEAQATQHDLLLEAYRSLARRYAALEARLAEEGVTSVDTISWDS
GRLCHASHLSSHSSRGSARTPSGPRSPSSRAPYSPVYSPYPHPVSPSYTPGHTPVASSRR
GPRFIRTARKRVVGSSTVFRFRHPAPPPPAARAAAGPRQMASHPRRTARAPARFGFEDGR
VEAEANHEPANEHSHHSNRSHRTVSRNAEVEQPRRSSRSHRTVSREAELEQSHRSHRTAS
HNSGEERLPSPPHGENNMQHIMAVQTQILQGLTTAIASFQHNAHGNGHPHVGNNRSKLTD
FLRSRPPEFSQTVEPVEADDWLKDVDRKLNLVQCTPVEKTLYASHQLRGPAADWWENYCN
AHPEPTNIAWDEFAAAFRAAHVPESTIDMKKEEFNRLKQGHSSVNEYLSQFNKLARYAPE
EVNTDKKKIRKFLKGIAVGMRLQLLAHDFPTFQHMINKALLLEDARKEATEEYKKRKSNH
QGNSSRGAPRPRYGQPMQYHQSVTQTNRQPGYAPRPQINRPAPQPQKHAPSGNTAPNSVT
SFKSPQGPSAVQCFRCNQMGHYARQCPQNPTNTNSGHANGSTARTPTPAAAQSRPNSQAS
GQGSRASNHFGRGRVNHIQAETAQDAPDVVMGMFSVNSVPAIVLFDSGASHSFISQAFVK
RNGWKTQNLRVPMIVHSPGRNIRATQICPEVNLRIEEVDFLAKPIVLDSQSLDIILGMDW
LAKHKGQIDCAEKSITLQGPGGKQVRFTPNTPTASRSILTCLQVTSLESVPIVCEYPDVF
PEELTRMPPDREIEFAIELAPGTAPIAKRPYRMAANELAEVKRQIEELESKGYVRPSSSP
WGAPVLLVKKKDGSERMVIDYRALNEVTIKNKYPLPRIDDLFDQLKGARVFSKIDLRSGY
HQLKIRSEDIPKTAFSTRYGLYEFTVMSFGLTNAPAFFMNLMNKIFMEYLDQFVVVFIDD
ILIYSKNEEEHAEHLRLIMEKLRDHQLFAKFSKCEFWLDRVAFLGHVISSNGVEVDPSKV
EAVLAWNPPKNVSEIRSFLGLAGYYRRFIEGFSKLARPMTELLKKEKKFQWSTACEDNFQ
EMKKRLTTAPVLTLPDIRKDFEIFCDASRQGLRCVLMQERKVVAYASRQLRPHEVNYPTH
DLELAAVIHALKIWRHYLIGNRCEVYTDHKSLKYIFTQTELNMRQRRWLELIKDYDLGIH
YHPGKANVVADALSRKAYCNVAQIRPDQDQLCRELEKLRLTVVQSGVPASLTVQPTLESQ
IREAQKEDEGIKELIERIQEKKDTNFSIDDQGTVWCGPRICVPAKKELRDLILKEAHESA
YSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDICQRVKAEHHRPAGLLQPLPIPEWK
WEEIGMDFITGLPRTPSGYDSIWVIVDRLTKSAHFVPVKTTYDGKKLAELYMTHVVCRFG
CPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHPQTDGQTERVNQILEDMLRACALD
FEGTWDRCLPYAEFSYNNSYQASIQMSPNEAMFGRRCRTPLCWNEVGEALVFGPDILKSA
EEQVKLIRERLKTAQNRQKNYADNRRRDLEFEKGDHVYLRVSPLRGMRRFGMSGKLARRY
IGPYLITARRGEVAYQLELPEGLADVHNVFHVSQLKKCLRVPEEQVPLGNIELEKNLTYK
ERPIKVLEEAERQTRRNTIKFYKVQWSNHSEDEATWEREDLLRAEFPELLP
Download sequence
Identical sequences Q2QNF0
39947.LOC_Os12g38030.1 LOC_Os12g38030.1|PACid:21937632 LOC_Os12g38030.1|13112.m03918|protein

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