SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSOPRP00000001046 from Ochotona princeps 69

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSOPRP00000001046
Domain Number 1 Region: 510-588
Classification Level Classification E-value
Superfamily RNA-binding domain, RBD 0.0000000000285
Family Canonical RBD 0.016
Further Details:      
 
Weak hits

Sequence:  ENSOPRP00000001046
Domain Number - Region: 271-297
Classification Level Classification E-value
Superfamily CCCH zinc finger 0.000111
Family CCCH zinc finger 0.004
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSOPRP00000001046   Gene: ENSOPRG00000001124   Transcript: ENSOPRT00000001134
Sequence length 987
Comment pep:novel genescaffold:pika:GeneScaffold_2481:43021:192187:-1 gene:ENSOPRG00000001124 transcript:ENSOPRT00000001134 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MVSKMIIENFEALKSWLSKTLEPMCCDADPSALAKYVLALVKKDKTQIFVEKLFDAVNTK
SYLPPPEQPSAGSLKVEFFQHQEKDIKKEEITKEEEREKKFSRRLNHSPPQSSSRYRENX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXRDLVKPKYDLDRTDPLENNYTPVSSVPSISSGHYPVPTLSSTITVIA
PTHHGNNTTESWSEFHEDQVDHNSYVRQPMPKKRCRDYDEKGFCMRGDMCPFDHGSDPVV
VEDVNLPGMLPFPAQPPVVEGPPPPGLPPPPPILTPPPVNLRPPVPPPGPLPPSLPPVTG
PPPPLPPLQPSGMDAPPNSATSSVPTVVTTGIHHQTPPAAASPKANTYDTDGYNPEAPSI
TNTSRPMYRHRVHAQRPNLIGLTSGDMDLPPREKPPNKSSMRIVVDSESRKRTIGSGEPG
VPTKKTWFDKPNFNRTNSPGFQKKVQFGNENTKLELRKVPPELNNISKLNEHFSRFGTLV
NLQVAYNGDPEGALIQFATYEEAKKAISSTEAVLNNRFIKVYWHREGSTQQLQNTSPKVL
QPLVQQPILPVVKQSVKERLGPVPSSTVEPAEAQSASSELPQXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXMLISKLEKNKTMKSEDKAEIMKTLEVLTKNITKLKDEVKAASPGRCL
PKRIKTKTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAVHGARFKGQDLKLAWNKPIANISAVETEEIEADEEEFQ
EESLVDDSLLQDDDEEEEDNESRSWRR
Download sequence
Identical sequences ENSOPRP00000001046 ENSOPRP00000001046

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]