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Domain assignment for Carubv10025799m|PACid:20913454 from Capsella rubella v183

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Carubv10025799m|PACid:20913454
Domain Number 1 Region: 783-827
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.00000000262
Family HkH motif-containing C2H2 finger 0.071
Further Details:      
 
Domain Number 2 Region: 546-585
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.0000000168
Family HkH motif-containing C2H2 finger 0.04
Further Details:      
 
Domain Number 3 Region: 435-470
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.00000104
Family HkH motif-containing C2H2 finger 0.048
Further Details:      
 
Domain Number 4 Region: 366-400
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.00000171
Family HkH motif-containing C2H2 finger 0.076
Further Details:      
 
Weak hits

Sequence:  Carubv10025799m|PACid:20913454
Domain Number - Region: 26-72
Classification Level Classification E-value
Superfamily IpsF-like 0.085
Family IpsF-like 0.0092
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Carubv10025799m|PACid:20913454
Sequence length 1030
Sequence
MTTAEADYVKVKTSVWWDIENCEVPKGWDAHAIAQNVRLALWNMNYCGPISISAYGDTNL
IPHAVQQALSSTGVGLNHVPAGVKDASDKKILVDMLFWAVDNAAPANFMLISGDRDFSNA
LHQLRMRTYNILLAQPPQASAPLVAAAKNVWLWTTLASGGPPLTSSESSELVNYVRRHVS
NKEVSKHPVSEQSQSSKPTDSSSDIGDPKDNKTREKHVRKGLCQGTRRNMLENSSGTTSE
SSRLVNNGLCHVSNYEVSKYPVSEQPQFSKPIDSTSDAGDTKDHKTRENHIPTGSPQETR
RYMHQNGRGPTGESVTASRICNVVCDSSAKFTAHLSDKMQISQPAFLESRKAPANISAKP
IQEAVLVEPVVCKVCHISCTNNDAYKKHTYGKRHRNNLELNLEKSKNISLGPVVSSNEVL
EKHMKNKKAIEGKAKANADFACLMCNVVCHSQIVFDSHLRGQKHANMLSQSEALVDSKKL
QEKSVGLNDQPSIAEPLLQSQKAQENTKCFEKLLSVAIQSEVLIDSTKKLQEKGVEDKDQ
PREKTVHPKANANLVCHLCNVVCQSQIVFDSHLRGKKHAAKLSQSKAFIDSNKIEEKGVG
EKDQRRETIAEPQLQSQNAQENSKCFEKHVVMGKPSEELINAMARKFEVKDVRDNNQPIE
KISEPRSQSQNTQEHTKFFEKQNEELRKICGTSESSVKENFQSTKDQVETVHKLILNGEI
FSGALRSDFEVPRETRECSDGIVKPITLFERANEHSGEVKKGKDVMVAFGASDDAQSSVS
TKPVKEPEVLQPVWCQVCQMSCNSKVAYANHAYGKKHRQKLESQAAKNENMSKGPPKLSK
DNGEKKKKVACKNQTTFDSHLKSQNLSAIVKEPVEALVNSRRTQEIPTEALEQFIVDSRT
ILEETDQETETTEEHTLVKINNLEFRGAPEDKVEMKERHVVSENLVQRVFTEQNRESRIL
KEPRGCVDVIPVAVKVELPPNVNAAKKWQDELKHKPEPKAGEPAGIKGHLGEAAKREESN
FWTRLWGKKS
Download sequence
Identical sequences R0ETT1
XP_006279564.1.15642 Carubv10025799m|PACid:20913454

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