SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|46447560|ref|YP_008925.1| from Candidatus Protochlamydia amoebophila UWE25

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|46447560|ref|YP_008925.1|
Domain Number 1 Region: 198-575
Classification Level Classification E-value
Superfamily RNI-like 1.18e-57
Family 28-residue LRR 0.0053
Further Details:      
 
Domain Number 2 Region: 519-760
Classification Level Classification E-value
Superfamily RNI-like 7.06e-43
Family 28-residue LRR 0.041
Further Details:      
 
Domain Number 3 Region: 53-128
Classification Level Classification E-value
Superfamily POZ domain 0.0000011
Family BTB/POZ domain 0.071
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|46447560|ref|YP_008925.1|
Sequence length 761
Comment hypothetical protein pc1926 [Candidatus Protochlamydia amoebophila UWE25]
Sequence
MDENNPLVNPLANTEETGASTIPAPALAPSSEEIQLSFQEGTSLTISHSQLAFLRDKSPY
FKNLWSGQFQETLQHPLALTQKEFALLLNCLTNPKFEIPLEEITSAMQLADSYELTEVMK
NLEEQLIDGYKTQRFEPFNSTKESLVEFKELLNFAHLYQLNTLKNYLEFTVVSELLNQTS
QLAEFERIINHFSKKIERLNFSNQVYLTNAHLLALKDCKNLKALHLEACQALTDDGLEHL
TLLTALQHLNLSRCKNLTDAGLAHLTPLTGLQYLDLSHCNKFTDAGLAYLEILTALQHLD
LRGCDKITDAGLSHLTPLVALQYLSLSQCWNLTDAGLIHLKPLTALQYLNLSRCNKLTDA
GLEHLALLTSLQHLNLSSCKKLTDAGLAHLTPLMALQHLDLSICNKLTDRGLTHLNPLTA
LQYLNLSQCDNITNAGLEHLIPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCY
KLTDAGFAHLTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHL
TPLMALQHLNLSSCYKLTDAGFAHLSPLTALQRLDLSYCQNLTDAELAHLTPLTALQRLD
LRYCENLTDAGLVHLKLLTDLQYLNLRGCGYLTDAGLAHLTTLSGLQHLDLSSCEKLTDA
GLVHLKLLTDLQYLNLSRCENLTDEGLALLTPLTALQHLKLRYCINLTDAGLAHLTPLTG
LQRLDLSQCWNLTDAGLIHLKLLTALQHLNLSDTNISPMQD
Download sequence
Identical sequences Q6M9U9
264201.pc1926 gi|46447560|ref|YP_008925.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]