SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for Gorai.012G034400.3|PACid:26828226 from Gossypium raimondii v221

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  Gorai.012G034400.3|PACid:26828226
Domain Number 1 Region: 208-479
Classification Level Classification E-value
Superfamily WD40 repeat-like 9.99e-48
Family WD40-repeat 0.003
Further Details:      
 
Weak hits

Sequence:  Gorai.012G034400.3|PACid:26828226
Domain Number - Region: 138-227
Classification Level Classification E-value
Superfamily Putative isomerase YbhE 0.0615
Family Putative isomerase YbhE 0.021
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Gorai.012G034400.3|PACid:26828226
Sequence length 495
Sequence
MISAIAWVPKGAAKAEPIVAELPSKEEIEELIKSGALDRSEDNGDNGSEDEDEDMVAEAE
KQTGDVAQALAVADALGKTSKNKSGTQLEDLTDGLKELDMENYDEEDDGIELFSKGLGDL
YYPSNEMDPFLKDQDDDDSEEVEDMTIRPMDSVIVCARTEDDVSHLEVWIYEDLDEGDSN
MYVHHDVIISAFPLCTAWLDCPIRGGEKGNFVAVGSMEPSIEIWDLDIIDEVQPCLVLGG
TVEKKTKKGKKKPKYKDGSHTGAVLGLAWNKEYRNILASASADKQVKIWDVAAGKCNITM
EHHEGKVQAVAWNHHVPQVLLSGSFDRSVVMKDGRVPTHSGFKWSVTAEVECLAWDPHTE
YSFVVSLEDGTIRGYDIRAAKSDPSSESKPSFTLHAHDKAACTLSYNPAAPNLLATGSMD
KMVKLWDLSNNQPSCVASKNPKAGAVFSISFSQDNPFCLAIGGSKGKLGVWDTLTETAVS
GKFGSYSQQPNRPKA
Download sequence
Identical sequences A0A0D2RWW7
Gorai.012G034400.1|PACid:26828229 Gorai.012G034400.2|PACid:26828227 Gorai.012G034400.3|PACid:26828226 Gorai.012G034400.4|PACid:26828228 Gorai.012G034400.5|PACid:26828230 Gorai.012G034400.8|PACid:26828231 XP_012460115.1.20347 XP_012460116.1.20347 XP_012460117.1.20347 XP_012460118.1.20347 XP_012460119.1.20347 XP_012460120.1.20347

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]