SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 2ja6_G from Protein Data Bank

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  2ja6_G
Domain Number 1 Region: 1-80
Classification Level Classification E-value
Superfamily N-terminal, heterodimerisation domain of RBP7 (RpoE) 2.27e-23
Family N-terminal, heterodimerisation domain of RBP7 (RpoE) 0.00000494
Further Details:      
 
Domain Number 2 Region: 81-170
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 1.56e-19
Family Cold shock DNA-binding domain-like 0.00000493
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) 2ja6_G
Sequence length 171
Comment mol:protein length:171 DNA-DIRECTED RNA POLYMERASE II 19KDA POLYPEPTIDE
Sequence
MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGR
ILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLT
FNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHAIGSIKEDYLGAI
Download sequence
Identical sequences A0A0L8RQ01 A6ZZ03 B3LFP8 C7GSC0 C8Z5W7 E7KBA5 E7KM51 E7Q2G3 E7QDD7 G2WBE2 H0GEL4 P34087
YDR404C YDR404C NP_010692.3.97178 XP_018223938.1.77003 YDR404C YDR404C YDR404C 1nt9_G 1pqv_G 1wcm_G 1y14_B 1y14_D 1y1v_G 1y1w_G 1y1y_G 1y77_G 2b63_G 2ja5_G 2ja6_G 2ja7_G 2ja7_S 2ja8_G 2r7z_G 2r92_G 2r93_G 2vum_G 3fki_G 3h3v_H 3hou_G 3hou_S 3hov_G 3how_G 3hox_G 3hoy_G 3hoz_G 3i4m_G 3i4n_G 3j0k_G 3j1n_G 3k1f_G 3po2_G 3po3_G 3qt1_G 4a3b_G 4a3c_G 4a3d_G 4a3e_G 4a3f_G 4a3g_G 4a3i_G 4a3j_G 4a3k_G 4a3l_G 4a3m_G 4a93_G 4bbr_G 4bbs_G 4bxx_G 4bxz_G 4by1_G 4by7_G 4v1n_G 4v1o_G 5fmf_G 5fyw_G 5fz5_G 5ip7_G 5ip9_G 5oqj_G 5oqm_G 5ot2_G 5sva_G 5u5q_G 5vvr_G 5vvs_G YDR404C YDR404C YDR404C YDR404C YDR404C YDR404C YDR404C ORFP:5333 YDR404C YDR404C YDR404C YDR404C 4932.YDR404C ORFP:4188 SCRT_00128 ORFP:5233 YDR404C YDR404C tr|A6ZZ03|A6ZZ03_YEAS7 YDR404C YDR404C 1y14B YDR404C YDR404C YDR404C

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]