SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Domain assignment for 5v1n_A from Protein Data Bank

Domain architecture

Domain assignment details

show help)
Strong hits

Sequence:  5v1n_A
Domain Number 1 Region: 153-333
Classification Level Classification E-value
Superfamily Nucleotidyltransferase 1.6e-66
Family DNA polymerase beta-like 0.0000000246
Further Details:      
Domain Number 2 Region: 4-87
Classification Level Classification E-value
Superfamily DNA polymerase beta, N-terminal domain-like 3.73e-33
Family DNA polymerase beta, N-terminal domain-like 0.0000148
Further Details:      
Domain Number 3 Region: 92-147
Classification Level Classification E-value
Superfamily PsbU/PolX domain-like 1.19e-16
Family DNA polymerase beta-like, second domain 0.0000934
Further Details:      

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 5v1n_A
Sequence length 335
Comment mol:protein length:335 DNA polymerase beta
Download sequence
Identical sequences G1RQX7 G3SIQ7 H2QW35 P06746
NP_002681.1.87134 NP_002681.1.92137 XP_001143904.1.37143 XP_003269687.1.23891 XP_003823336.1.60992 XP_018887757.1.27298 2fmpA ENSPTRP00000034604 ENSP00000265421 ENSP00000265421 1bpx_A 1bpy_A 1bpz_A 1mq2_A 1mq3_A 1tv9_A 1tva_A 1zjm_A 1zjn_A 1zqa_A 1zqb_A 1zqc_A 1zqd_A 1zqe_A 1zqf_A 1zqg_A 1zqh_A 1zqi_A 1zqj_A 1zqk_A 1zql_A 1zqm_A 1zqn_A 1zqo_A 1zqp_A 1zqq_A 1zqr_A 1zqs_A 1zqt_A 2fmp_A 2fmq_A 2fms_A 2i9g_A 2iso_A 2isp_A 2p66_A 2pxi_A 3c2k_A 3c2l_A 3c2m_A 3isb_A 3isc_A 3isd_A 3jpn_A 3jpo_A 3jpp_A 3jpq_A 3jpr_A 3jps_A 3jpt_A 3lk9_A 3mby_A 3rh4_A 3rje_A 3rjf_A 3rjg_A 3rjh_A 3rji_A 3rjj_A 3rjk_A 3tfr_A 3tfs_A 4do9_A 4doa_A 4dob_A 4doc_A 4kld_A 4kle_A 4klf_A 4klg_A 4klh_A 4kli_A 4klj_A 4kll_A 4klm_A 4klo_A 4klq_A 4kls_A 4klt_A 4klu_A 4lvs_A 4o9m_A 4rt2_A 4rt3_A 4uaw_A 4uay_A 4uaz_A 4ub1_A 4ub2_A 4ub3_A 4ub4_A 4ub5_A 4ubb_A 4ubc_A 4ymm_A 4ymn_A 4ymo_A 4yn4_A 5bol_A 5bom_A 5bpc_A 5db6_A 5db7_A 5db8_A 5db9_A 5dba_A 5dbb_A 5dbc_A 5eoz_A 5j0o_A 5j0p_A 5j0q_A 5j0r_A 5j0s_A 5j0t_A 5j0u_A 5j0w_A 5j0x_A 5j0y_A 5j29_A 5j2a_A 5j2b_A 5j2c_A 5j2d_A 5j2e_A 5j2f_A 5j2g_A 5j2h_A 5j2i_A 5j2j_A 5j2k_A 5tzv_A 5u8g_A 5u9h_A 5ugn_A 5ugo_A 5ugp_A 5v1f_A 5v1g_A 5v1h_A 5v1i_A 5v1j_A 5v1n_A 5v1o_A 5v1p_A 5v1r_A 5vez_A 5wnx_A 5wny_A 5wnz_A 5wo0_A 6cr4_A 6cr5_A 6cr6_A 6cr7_A 6cr8_A 6cr9_A 6crb_A 6crc_A 6g2q_A 7ice_A 7icf_A 7icg_A 7ich_A 7ici_A 7icj_A 7ick_A 7icl_A 7icm_A 7icn_A 7ico_A 7icp_A 7icq_A 7icr_A 7ics_A 7ict_A 7icu_A 7icv_A 8ica_A 8icb_A 8icc_A 8ice_A 8icf_A 8icg_A 8ich_A 8ici_A 8icj_A 8ick_A 8icl_A 8icm_A 8icn_A 8ico_A 8icp_A 8icq_A 8icr_A 8ics_A 8ict_A 8icu_A 8icv_A 8icw_A 8icx_A 8icy_A 8icz_A 9ica_A 9icb_A 9icc_A 9ice_A 9icf_A 9icg_A 9ich_A 9ici_A 9icj_A 9ick_A 9icl_A 9icm_A 9icn_A 9ico_A 9icp_A 9icq_A 9icr_A 9ics_A 9ict_A 9icu_A 9icv_A 9icw_A 9icx_A 9icy_A gi|4505931|ref|NP_002681.1| ENSPTRP00000034604 ENSNLEP00000015641 ENSNLEP00000015641 ENSP00000265421 9598.ENSPTRP00000034604 9606.ENSP00000265421

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]