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Domain assignment for gi|121583282|ref|YP_973718.1|NC_008759 from NCBI plasmid sequences

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|121583282|ref|YP_973718.1|NC_008759
Domain Number 1 Region: 606-664,1109-1220
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 6.35e-16
Family Tandem AAA-ATPase domain 0.02
Further Details:      
 
Weak hits

Sequence:  gi|121583282|ref|YP_973718.1|NC_008759
Domain Number - Region: 541-610
Classification Level Classification E-value
Superfamily Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.0261
Family Hypothetical protein YycE 0.05
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|121583282|ref|YP_973718.1|NC_008759
Sequence length 1410
Comment helicase domain-containing protein [Polaromonas naphthalenivorans CJ2 plasmid pPNAP03]
Sequence
MPDLLMRADPLTISTALKEAVVDALVNLTFQRISGHGPEGSILFGARPRALLSSAFLLPV
PAGAAGGDEVTQPIQICAHGLDFQVSTSRQGPVVVQPRLQVYVRVLPSVEDMARPDCVLR
FRLNDVTRRDLQAKVSAALKAKWAEMMGTYKRRVDHPGWKTAEDEIRTRIHADLGLPRDL
KTLFSEEPEDASDEEGASANVAEDGAAEEGFTVPGASAPELTLKDSQFQPMDIPHKWLRL
PLPQDALPTFILDPQQDKSGLREACELAASALNGAIGTALLAWATSPEGLAWGFRTGIKV
YPSEYKGWAAFLEKVRASGKPVALPAIKLGWDARVSPDWLDPARASVHVSLENRSEPPKK
NRDETDDAVFQVDVTATLPRALHRPLKLGRVEASYRYNKYLDYPATGFNGGVEVLHSENP
QVLTLRTTWSPRYTQPRIVPKSYTAVNPHIRALSEPQGLAGLLLLGEELDAWLATLPSKV
HLQEGLSADDVPGLLREQGGFAADTESWKKEIQAIHAGLRILKESKAEWDKTKKRGPQSS
DKAAVYEAWLAMNETMAELMKEKLPDDSGAWRLFQIAFIVANVPAIASRMKCFGHEFDRE
RDDTVTLLYFATGGGKSEAFFGLLVLNLFFDRLRGKKTGVTAMLRYPLRLLTIQQAQRCA
RVLAKAELVRRKHGHGGDAFALGFWVGSGGSPNHPGAPGMDLIPPVEKEPPTAKGEAALL
QTDVNYELQKAAWNKIPNCPFCKADTALRLFPALGGTLAHVCTSASCASNIGGWQPLPFY
ICDSDIYDLAPSVLLGTVDKLALIGQSAKTLRRIYGMLGAAPWRHKATGRLRVPQQPKEF
AGGPAAHGCEGLFPAYPDGIKLFHDPFPSLLIQDEAHLLDESLGTFAGLFESALDAILAE
MSKPLHALVTFEPDGQTRRRAKVIAASATVSEPQRQMEHLYQRPVPAMQFPFPGQSLYES
FYAGPKAPSPQDTGRAAFATRDIEKWASWSRVYVAFMTNGRPHTATTVSVLSNFHTLISE
FLMGMASGDTPRIEALRARLTAGVSEGPLCAMYVAQLEAATDSELATLIDLHRIALTYVT
NKKGGDQIMAAEFEETRKRHADRGLAMGDLKTKLISGSVSQGDIQHTIEDAQRRPAPGHP
MGELGDVLRSVIATSSISHGVDVDEFNAMFFAGMPSDIAEYIQASSRVGRTHVGFIVLIP
TPQRRRDRYIVEVFDSFHRFLERMVQPAAIDRWAGKAIERVLPSFIQTYLTGVRYMSDIT
WAEPEDKENVASLDWIPSIIRELKQEASKKKLVDGLCRFIERAIGLNNGDFAPGGKEHYS
ALVRDKVYDLLNGWASNDLQAEQSLFEYFREQTSVMNRPMTSLRDVDEMANIHFGGKDLN
GRRLETELARKVMIFIRHGVAQSDVRGEGQ
Download sequence
Identical sequences A1VWE8
gi|121583282|ref|YP_973718.1|NC_008759 WP_011798347.1.22642 365044.Pnap_4912 gi|121583282|ref|YP_973718.1|

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