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Domain assignment for gi|16263169|ref|NP_435962.1|NC_003037 from NCBI plasmid sequences

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|16263169|ref|NP_435962.1|NC_003037
Domain Number 1 Region: 386-700
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 8.04e-42
Family ABC transporter ATPase domain-like 0.077
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|16263169|ref|NP_435962.1|NC_003037
Sequence length 792
Comment VirB4 type IV secretion protein [Sinorhizobium meliloti 1021 plasmid pSymA]
Sequence
MPSLTTLRSRELGPETFIPYVRHVDESTIALDSRALMVMIALEGVSFETADILDLNALHR
DLNTLYRNIADERLALWTHLIRRRDNSYPEGTFATPFSAALNDKYRERMVGEDLFRNDLY
LSILWSPARDPADKAAKLLSRLRRARRVGTELDEGALKHLRDKVIDVTAALRRFEPRVLT
LYEHDGLMFSEPSEVLHQLVGGRREPIPLTEGHIASAIYSDRVIVGRETIEIRHEADSRY
AGMLSFKEYPARTRTGMLDAVLTSPFELILAQSFSFVSKADARMIMGRKQNQMVSSGDKA
ASQIEELDGAMDDLESNRFVFGEHHLTLSVFAPSVKELTDNLAKARASMTSGGAVVARED
LGLEAAWWAQLPGNFRYRARSGAITSRNFAALSPFHSYPLGQKDGNEWGPAVALLKTASG
SPYYFNFHYGDLGNTFVCGPSGAGKTVLLNFMLSQLEKHDPHVVFFDKDRGADLYVRAAG
GTYLPLKNGIPTGCTPLKALELTPENKVFLTRWVGKLVGSATRELSVTELRDISSAIDGL
ADLPVERRTIGALRTFLDNTNPEGIAARLRRWERGGPLGWVFDNVIEDIGFGEFGGGKLV
GYDMTDFLDNEEIRAPLMAYLFHRVEQLIDGRRIIIVIDEFWKALQDEGFRDLAQNKLKT
IRKQNGLMLFATQSPRDAIVSPIAHTIIEQCPTQIFLPNSRGNHGDYVDGFKLTEREFEL
VARELSIESRRFVLKQGHNSVVAELDLKGLDDELAILSGRTANVELADAIRAEVGSNAKD
WLPVFQQRRSAT
Download sequence
Identical sequences Q92YZ6
gi|16263169|ref|NP_435962.1|NC_003037 gi|470184696|ref|YP_007572669.1|NC_020527 RmR108 gi|16263169|ref|NP_435962.1| 266834.SMa1315 NP_435962.1.96377 WP_010967693.1.18618 WP_010967693.1.4234 WP_010967693.1.58221 WP_010967693.1.58608 WP_010967693.1.66997 WP_010967693.1.787 WP_010967693.1.90968 WP_010967693.1.94084

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