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Domain assignment for gi|169237430|ref|YP_001690634.1|NC_010368 from NCBI plasmid sequences

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|169237430|ref|YP_001690634.1|NC_010368
Domain Number 1 Region: 23-237
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 0.0000000000000185
Family RecA protein-like (ATPase-domain) 0.031
Further Details:      
 
Weak hits

Sequence:  gi|169237430|ref|YP_001690634.1|NC_010368
Domain Number - Region: 258-285
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 0.0777
Family RecA protein-like (ATPase-domain) 0.023
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|169237430|ref|YP_001690634.1|NC_010368
Sequence length 492
Comment regulatory protein gvpD [Halobacterium salinarum R1 plasmid PHS3]
Sequence
MSARTPLHAPPSHEGIAHFPREIRRFFTGEPGQTLLVNGAPGTGKTLFTIRGLDVLSREG
DVLYVSTRVDQETVYEMYVEGHAALDRTALLDLSQDPFGLPMDVDVPFETLNLESLLSWV
DAISAPATKLTLAFDSWRLVYEYLAARHDSPPSIETVTNQLVALARDAGVRLVLVSETAT
QSPLEYIVDGVVTLHVTDNERGRTRRQLRLEKLRGVRIENRLQPFTLADGQFKAITPVEL
STTQSVPDEATWEPLANPTARFSTGIRDLDTILSGGFNRGGVVHLDLGADLSRDAWSVLV
LPAIRNFLANEMGVAVVPPKEGSPGLLHNDLSAVLSKAVFDTHCHVFETYAGPTRDHDDA
VDPDRLPGHDTTPTEHGTLSYDPYIARAERIREHSDGPLLHVISMDTAYHAFETRLGDFA
NYVALHNDASVLITKPGTALRTRADRVADMHFRLECAGDAIVLYGETPLTPLLGIGVDQS
GTIPEITLTEMV
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Identical sequences B0R9S0 Q9HHT2
WP_010904107.1.1784 WP_010904107.1.50382 478009.OE5124R 64091.VNG6240G gi|169237430|ref|YP_001690634.1| gi|16120171|ref|NP_395759.1|NC_002608 gi|169237430|ref|YP_001690634.1|NC_010368 gi|16120171|ref|NP_395759.1|

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