SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|399994784|ref|YP_006575016.1|NC_018291 from NCBI plasmid sequences

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|399994784|ref|YP_006575016.1|NC_018291
Domain Number 1 Region: 579-860
Classification Level Classification E-value
Superfamily Methyl-accepting chemotaxis protein (MCP) signaling domain 4.05e-65
Family Methyl-accepting chemotaxis protein (MCP) signaling domain 0.00000111
Further Details:      
 
Domain Number 2 Region: 493-542
Classification Level Classification E-value
Superfamily HAMP domain-like 0.00000314
Family HAMP domain 0.0057
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|399994784|ref|YP_006575016.1|NC_018291
Sequence length 890
Comment methyl-accepting chemotaxis protein [Phaeobacter inhibens DSM 17395 plasmid pPGA1_262]
Sequence
MTTQTRKRATRRWNPLSSIRAKMFLILLAMAGTSAAIGYAVTQAFEQVSADVHVLTEDKL
PELELSGQMTAAAARTKDAMVAVMLAETPGSLDFAKSDVTAAVRALDGAVEQLPQVLRDE
FKPDVVMVEEALEASIAARTVAFKNAAAVIAMMEQLQGLSSAMQVTLAEMADNAYSNLSK
GGEQTMSAVDATLVDLVEVKFATLQSLLQARAEINLISGIALAIGETEDRAMQSILMDLA
KASDGRLNDVIDILEVEAPGVVPIFAIRDAAAVLQKAVSRGRLQSNALRQEVLSARLSSD
TELSTAVDDMVFEVTLAAEDASDDSKKAIQGLLTNEVGFLNTLLEINTWISNFQVAALDV
VTAQSIAQTRAAAEPMEQAAAALAEYKTFDDGRLATQLDEIITMAEPDQGLAIFRIASLT
ADADATKEANATANAVLQIASRASLLGSGSRGEIAYMATDIAVTVDEAHANIERLLMMAA
GLLVMALLLTHWLVQRPLNAISRTTERLADGDLSPINGFDRTSDEIYRIAQALTVFRDGL
VEKEALSKATEEERAAHQAQQTAAVTAIGNGLARLAQGDLSARITEELTEGYAQLQADFN
LTVETLSRTVVDMVDVASSIRNGADEISQASDDLSRRTESQAATLEETAAALDELTASVK
SAADGARAVEATTQDAKSEAVKNGSVVNSAVSAMTDIEESSKHIAQIIGVIDDIAFQTNL
LALNAGVEAARAGDAGRGFAVVASEVRGLSQRTSEAAMEIKTLISESSKKVDYGVELVGK
AGTALSDIVAQVGQISQQVSEIADGAASQSTGLHEINIGMSQLDQVTQQNAAMVEESTAA
SHMLRGDATKLAELVSNFTVAEDNAPAAAAAVETQQDGWDEDPDDWQMTG
Download sequence
Identical sequences A0A2I7GEE6 I7F251
gi|399994784|ref|YP_006575016.1|NC_018291 WP_014881646.1.65966 WP_014881646.1.71111 gi|399994784|ref|YP_006575016.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]