SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|410685303|ref|YP_006061310.1|NC_017589 from NCBI plasmid sequences

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|410685303|ref|YP_006061310.1|NC_017589
Domain Number 1 Region: 232-516
Classification Level Classification E-value
Superfamily Methyl-accepting chemotaxis protein (MCP) signaling domain 2.49e-73
Family Methyl-accepting chemotaxis protein (MCP) signaling domain 0.0000000898
Further Details:      
 
Domain Number 2 Region: 51-142
Classification Level Classification E-value
Superfamily Aspartate receptor, ligand-binding domain 0.00000824
Family Aspartate receptor, ligand-binding domain 0.0091
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|410685303|ref|YP_006061310.1|NC_017589
Sequence length 607
Comment methyl-accepting chemotaxisI(Serine chemoreceptor protein) [Ralstonia solanacearum CMR15 plasmid CMR15_mp]
Sequence
MFRGMTIRLRLALMMAGVAVLAVVIGTTGLLGMRHANTRVQATYAMQLAGAVALAESDAS
MLSFRLVLDRAAMDLKAPSLGKTLERARMFLAKSDASWKRYRALPSTPDERKLADEADAL
RTVFLRDGAEVLMQAIQAGDAERTGKTVMEAMPALYRPLGDQVTALSRMQMEIARASYEA
GQREHDGLSALTAALLLIGIVGGGLLTWSLRRSITVPLNRAIEQAEHITRGDLTHAIDVD
RADETGRLLLALQRMQESLQGMVGQVRTGSDAIASATQQIAAGNADLSQRTEQQASSLEE
TASSMEQLTGMVKQNADSARQASTLAVNASDVAVKGGDVVGRVVETMAGIQESSKKIADI
IGVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIKTLISDS
VGRVESGTTLVAEAGTVIDEVVVAVKRVTGIMGEIAAASDAQSEGIAQVNQAVTQMDEAT
QQNAALVEQAAAAAMSLQEQADGLRGTVAAFRTRADAPVQTVARPLRPAASVKAPARATA
PARRPAPKAAVAVRPAARDEAAPSAAARSNEQPRTRQATAKAVVPAPKKQVPKLVAAGGD
ESDWETF
Download sequence
Identical sequences D8NET7
WP_014631960.1.86441 gi|410685303|ref|YP_006061310.1| gi|410685303|ref|YP_006061310.1|NC_017589

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]