SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|571044621|ref|YP_008997562.1|NC_023290 from NCBI plasmid sequences

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|571044621|ref|YP_008997562.1|NC_023290
Domain Number 1 Region: 156-259
Classification Level Classification E-value
Superfamily KorB DNA-binding domain-like 1.96e-20
Family KorB DNA-binding domain-like 0.0021
Further Details:      
 
Domain Number 2 Region: 67-164
Classification Level Classification E-value
Superfamily ParB/Sulfiredoxin 0.000000000000558
Family ParB-like nuclease domain 0.0053
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|571044621|ref|YP_008997562.1|NC_023290
Sequence length 682
Comment hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium plasmid p9134dT]
Sequence
MPSVISGFLSKRGAGRANVRQDISNYKGMIMPVTKCEPETTRKASRKSAKTQETALSALL
AQTEEVSVPLASLIKSPLNVRTVPYSVESVSELAGSIKGVGLLQNLVVHTLPGDRYGVAA
GGRRLAALNMLAERNILPADWPVRVKVIPQELATAASMTENGHRRDMHPAEQIAGFRALA
QEGKTPAQTGDLLGYSPRHVQRMLKLADLAPVILDALAEDRITTEHCQALALESDTARQV
QVFEAACQSGWGGKPDVRVIRNLITESEVAVKDNTKFRFVGADAFSPDELRTDLFSDDGD
GYVDRVALDAALLEKLQAVAEFLREAEGWEWCAGRMEPVGECREDAGTYRCLPEPEAVLT
EAEDERLNELMTRYDALENQCEESDLLEAEMKLMRCMAKVRAWTPEMRAGSGVVVSWRYG
NVCVQRGVQLRSEDDAADDADRTEQVQEKASVEEISLPLLTKMSSERTLAVQAALMQQPD
KSLALLAWTLCLNVFGSGAYSKPVQISLECKHYSLTSDAPSGKEGAAFLVLMAEKARLAA
LLPEGWSRDMTTFLSLSQEVLLSLLSFCTACSLNGVQTRECGHTSRSPLDSLESAIGFHM
RDWWQPTKANFFGHLKKPQIIAALNDAGLSGAARDAEKMKKGDAAEHAEHHMKDNRWVPG
WMCAPHPQTDTTERTDNLADAA
Download sequence
Identical sequences A0A229ALL3 A0A2I7QFX1 E9LM65 Q8L228
gi|410651580|ref|YP_006954702.1|NC_019104 gi|571043377|ref|YP_008994926.1|NC_023275 gi|571043485|ref|YP_008995033.1|NC_023276 gi|571044621|ref|YP_008997562.1|NC_023290 WP_015059346.1.100346 WP_015059346.1.101654 WP_015059346.1.14600 WP_015059346.1.16896 WP_015059346.1.17301 WP_015059346.1.1778 WP_015059346.1.18983 WP_015059346.1.23092 WP_015059346.1.23105 WP_015059346.1.25086 WP_015059346.1.25454 WP_015059346.1.26403 WP_015059346.1.26658 WP_015059346.1.29118 WP_015059346.1.37153 WP_015059346.1.39184 WP_015059346.1.39594 WP_015059346.1.39796 WP_015059346.1.40238 WP_015059346.1.44857 WP_015059346.1.46912 WP_015059346.1.46999 WP_015059346.1.50586 WP_015059346.1.50715 WP_015059346.1.5095 WP_015059346.1.54507 WP_015059346.1.55425 WP_015059346.1.561 WP_015059346.1.58867 WP_015059346.1.62264 WP_015059346.1.64670 WP_015059346.1.65151 WP_015059346.1.65256 WP_015059346.1.66550 WP_015059346.1.67293 WP_015059346.1.69341 WP_015059346.1.70370 WP_015059346.1.71183 WP_015059346.1.74946 WP_015059346.1.79356 WP_015059346.1.80060 WP_015059346.1.82833 WP_015059346.1.83020 WP_015059346.1.83035 WP_015059346.1.86617 WP_015059346.1.86753 WP_015059346.1.94626 WP_015059346.1.95849

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]