SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|608786615|ref|YP_009023118.1|NC_023909 from NCBI plasmid sequences

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|608786615|ref|YP_009023118.1|NC_023909
Domain Number 1 Region: 180-397
Classification Level Classification E-value
Superfamily Restriction endonuclease-like 3.7e-83
Family Type II restriction endonuclease catalytic domain 0.00000000182
Further Details:      
 
Domain Number 2 Region: 5-176
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 1.33e-61
Family Type II restriction endonuclease effector domain 0.0000000178
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|608786615|ref|YP_009023118.1|NC_023909
Sequence length 404
Comment EcoRII restriction enzyme [Escherichia coli plasmid pEcNDM1]
Sequence
MLMSVFHNWLLEIACENYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTREL
NPSVFLTAHVSSHDCPDSEARAIYYNSRHFGKTRNEKRITRWGRGSPLQDPENTGALTLL
AFKLDEQGGDCKEVNIWVCASTDEEDVIETAIGEVIPGALISGPAGQILGGLSLQQAPVN
HKYILPEDWHLRFPSGSEIIQYAASHYVKNSLDPDEQLLDRRRVEYDIFLLVEELHVLDI
IRKGFGSVDEFIALANSVSNRRKSRAGKSLELHLEHLFIEHGLRHFATQAITEGNKKPDF
LFPSAGAYHDTEFPVENLRMLAVKTTCKDRWRQILNEADKIHQVHLFTLQEGVSLAQYRE
MRESGVRLVVPSSLHKKYPEAVRAELMTLGAFIAELTGLYADIP
Download sequence
Identical sequences A0A023UEI8 A0A077W411 A0A0E1CRW9 A0A163X7B8 A0A222ZD53 A0A250MFE9 D7RTV8 F6IBA5 Q0QC82 R4WC16 V0ALC0
gi|190576898|ref|YP_001966230.1|NC_010886 gi|297622182|ref|YP_003675731.1|NC_014208 gi|336053233|ref|YP_004558210.1|NC_015599 gi|412342240|ref|YP_006973758.1|NC_019389 gi|435844850|ref|YP_007195376.1|NC_019888 gi|480529870|ref|YP_007349453.1|NC_020086 gi|498543583|ref|YP_007969731.1|NC_021199 gi|522817892|ref|YP_008144991.1|NC_021622 gi|608786615|ref|YP_009023118.1|NC_023909 gi|608786697|ref|YP_009023199.1|NC_023910

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]