SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|94314629|ref|YP_587838.1|NC_007974 from NCBI plasmid sequences

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|94314629|ref|YP_587838.1|NC_007974
Domain Number 1 Region: 700-869
Classification Level Classification E-value
Superfamily ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1.57e-41
Family Histidine kinase 0.0035
Further Details:      
 
Domain Number 2 Region: 896-1019
Classification Level Classification E-value
Superfamily CheY-like 8.68e-36
Family CheY-related 0.0009
Further Details:      
 
Domain Number 3 Region: 232-454
Classification Level Classification E-value
Superfamily Periplasmic binding protein-like II 1.69e-29
Family Phosphate binding protein-like 0.0049
Further Details:      
 
Domain Number 4 Region: 628-712
Classification Level Classification E-value
Superfamily Homodimeric domain of signal transducing histidine kinase 1.33e-20
Family Homodimeric domain of signal transducing histidine kinase 0.0024
Further Details:      
 
Domain Number 5 Region: 1-213
Classification Level Classification E-value
Superfamily Periplasmic binding protein-like II 9.45e-20
Family Phosphate binding protein-like 0.0088
Further Details:      
 
Domain Number 6 Region: 497-617
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 8.9e-17
Family Heme-binding PAS domain 0.059
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|94314629|ref|YP_587838.1|NC_007974
Sequence length 1040
Comment PAS/PAC sensor hybrid histidine kinase (bvgS-like) [Cupriavidus metallidurans CH34 plasmid megaplasmid]
Sequence
MLLRIGVMANGLPPFDLVGIDGNYEGISADYLAMIASTLHAKVEVRAYATRDAALHDLSR
DAIDVVATDPGQTEPAQGAIGFTPNQIIEIATRTTAHKLVGNQTLGYVNGQLDPQAILAA
YPGRKLQAYATLLDALTQLSLGADVVLLSNATAASYITAQYGIPNLVAVNVSRLSVGDLS
FLVRDPALRARFDAAIRAIPKPTRLAISTHWVPTALMPHFDKALNLTTEESAWIAAHPVA
RYRATNDRVPFVFSDEHGESVGLSVQVLGKIEERTGLRFEPVSADGNSDPDHATTPTIQP
IVPVDGPSERTDGLTITEPYFQGYWAIVAHVRQHGINNILDLAGKRVAVVLPNPIIDRLR
ATVPLQVVKAASYRDAYRMVATGIADATLGNMMTANYLIRESYPEALRIVAPISGTPLNV
GIGVPADEPMLLAILNKALLSLSREDINALRLRWSEPSSIAGSTETLPSWAWFSLSAGLV
LLAISLLWSQSLRQQIQRRRRMEAVLHEQLAFQTSILDAIPQPIYLRDIDLRLMTCNAAF
ERALGCGRKQMRGRTIDQMPLKLGDVPLSMQTYRKVLATGEAATLDRTLMIEGKERIVLN
WVEPLRNATGGVVGIIGGWIDMTERQQMVTELASAKDRAEAANRAKSAFLASISHEIRTP
MNAILGMLELTLQDKRLPDDDRLQVETAQESAKSLIGLIDDILDASKMEAGKFVLTPQPA
PLRQLIGDVTSLFGLAASRKGVQLEAIVDDAVAPCHMVDPLRFKQVLNNLVSNAVRFTDR
GSVVIRLGATNLTPDCQSLTFSVSDTGTGIPEDGLKKLFQPFTQIGDTKRSAGGTGLGLS
ICQRLVTKMHGTIGITSEVGKGTTVTATIELPIAAEIAPVLQSEQQNQPASKPGKALRVL
IVDDHAPNRILLQRQLEKLGHRAFTASDGCEALEKLTDATFDLIICDYSMPNMDGPTLTR
TIRSSDLPYRTLPILGYTASAQPEIRAHAIECGMDAVMIKPVDMATLETTLAANVNRRAH
PGLPGLALALAPCGKSALTA
Download sequence
Identical sequences Q1LBA7
gi|94314629|ref|YP_587838.1| WP_011520113.1.12480 WP_011520113.1.25839 gi|94314629|ref|YP_587838.1|NC_007974 266264.Rmet_5710

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]