SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for POPTR_0011s11150.1|PACid:18232085 from Populus trichocarpa v156

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  POPTR_0011s11150.1|PACid:18232085
Domain Number 1 Region: 66-160,188-205
Classification Level Classification E-value
Superfamily alpha-D-mannose-specific plant lectins 6.54e-31
Family alpha-D-mannose-specific plant lectins 0.0028
Further Details:      
 
Weak hits

Sequence:  POPTR_0011s11150.1|PACid:18232085
Domain Number - Region: 375-405
Classification Level Classification E-value
Superfamily Hairpin loop containing domain-like 0.0471
Family Pan module (APPLE domain) 0.079
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) POPTR_0011s11150.1|PACid:18232085
Sequence length 428
Sequence
MELPLFSLCLLFSISFTVHATVPPSSTFKYVNEGEFGEYISEYVPDYRPLPIGTSPFQLI
FYNTTPNAYTLALRMGTVRSESTMRWVWEANRGNPVRENATLTLGGDGNLVLADADGRVA
WQTNTANKGVVGLQLLSNGNMVLHDSKGNFIWQSFDSPTDTLLVGQSLRVGGVTRLVSRA
SETHNSDGAYSLVMEPKRLAMYYKSPNSPKPYIYYDFDSVYNGRLQNATLNCAPNGYDDL
ANDLTLDLSTGNAMTLARPKYNSTLSFLRIGIDGSLKMYTYNNKVDYQAWEETYTLFSRD
GFPEGECQLPERCGKFGLCEDSQCVACPLPSGLMGWSKYCEPVKPPACGSKNFYYYKLEG
VDHSMSKYGSGSGAMKEDDCGKKCSSDCKCLGYFYNKEISKCWIAYDLQTLTKVANSTHV
GYIKAPKQ
Download sequence
Identical sequences B9I1U0
XP_002316859.1.11743 POPTR_0011s11150.1|PACid:18232085 3694.fgenesh4_pg.C_LG_XI000890

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]