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Domain assignment for POPTR_0003s19390.1|PACid:18217116 from Populus trichocarpa v156

Domain architecture


Domain assignment details

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Strong hits

Sequence:  POPTR_0003s19390.1|PACid:18217116
Domain Number 1 Region: 179-315
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 6.07e-34
Family Eukaryotic type KH-domain (KH-domain type I) 0.0014
Further Details:      
 
Domain Number 2 Region: 85-177
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 5e-23
Family Cold shock DNA-binding domain-like 0.00011
Further Details:      
 
Domain Number 3 Region: 44-82
Classification Level Classification E-value
Superfamily Ribosomal L27 protein-like 0.00000201
Family ECR1 N-terminal domain-like 0.0067
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) POPTR_0003s19390.1|PACid:18217116
Sequence length 320
Sequence
MRGIEISLNQTQKIRLQRALKQLESLYLRANFNASVTVADTIPVSNEDTILKGHGTSERD
GEVVATLCGVVERVNKLVYVRTLRARYKPEIGDIIVGRVVEVAQKRWKLEINFSQDAVLM
LSSMNLPDGLQRRRTALDELNMRSIFEENDVVCGEVRNFQNDGGIQLQARSQKYGKLEKG
QLLTIPPYLVKRQKHHFHHLEQYGVDLILGCNGFIWVGEHVEARDCIVEDQLNNTEQQFT
KSNTTKEMPLETRRSICQIANAIRVLSILGFNVTLEVILETIDLSSTLNLGIDEMLGPEF
HVLVAEREAERRTSMTKRKG
Download sequence
Identical sequences B9GX78
3694.eugene3.00031704 XP_002303939.1.11743 POPTR_0003s19390.1|PACid:18217116

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