SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|124506685|ref|XP_001351940.1| from Protozoadb 2010_08

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|124506685|ref|XP_001351940.1|
Domain Number 1 Region: 91-124
Classification Level Classification E-value
Superfamily CCCH zinc finger 0.000000916
Family CCCH zinc finger 0.0032
Further Details:      
 
Domain Number 2 Region: 162-193
Classification Level Classification E-value
Superfamily CCCH zinc finger 0.00000209
Family CCCH zinc finger 0.0022
Further Details:      
 
Weak hits

Sequence:  gi|124506685|ref|XP_001351940.1|
Domain Number - Region: 128-158
Classification Level Classification E-value
Superfamily CCCH zinc finger 0.0144
Family CCCH zinc finger 0.0051
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|124506685|ref|XP_001351940.1|
Sequence length 843
Comment conserved Plasmodium protein, unknown function [Plasmodium falciparum 3D7]
Sequence
MSTNTSKKGYNKYMDKRMYVNNSNNSSSNSNNNNINSSSSSSNNNNNNVHQKEKMLHGQN
NSNCNSNNEEYRNIKKDDNMSNVVNTSERRILFYKTKICPWYIKGKCERRKTCLYAHAQN
ELRELPNLCKTSLCPKLKINELCNDKKCKYAHTNIELRATENLYKTALCESFIKGKCFSG
QFCRYAHGHNELRENPMEITDKNIIIGTSKNKSDKQEYEKKKNSSNSSNNPNNNNSNINN
NNINSNNNNNNNNNNMNHHINSNSSNSSNHINNNVDSNKRNETYCIFPKKKEIYFNKVNA
LTEDDGIYDITETIDPQLLNDSNTDNSYECNKKGAAAISTNVNNTTTEYVLKNGIKNAKS
NMSNNNINANMNVVNNANVNVAHMNHMMLNNMNHMHNMNHMNNINHMNNMNHMNNINHIN
VNMNSFMNGNMNHMTPLNHMNNMNMHLNLNHMNNMNSMNSMNSMNSMNNMNNMNNMNSIN
NMNNMNSMNSMNNVSSVNNVNHMNFNMNHMNFNMNHMNNHNNNNNNNNNNCSNSMIPSVM
NTSLENYNKAEDNSKFNEEQFLNDNLNVLGFLEETTSGEKFGRCSSTSNLLTDINCTNKQ
DTTNFTYNNCTNMDGIYNNNNNNIKYNNIHNMNNSTLSSNTINNNYNNMTTTNGSINYSS
NNNNNNNIEDNFNHFNNNNVDKFNYEDFFFGSISNNHPNNNTLSNNIMLNSDEVLHSRTQ
ALNTYIMNDDINNNTAPSTGRESSNNEDMLNNKMVMNNDTFNNDKENITNNNTTNNINNN
AENNVVTWEDFSLFGKSKAPISENDYFKIFNYGICNNMDNKLYENCDAYKNDIEKYDKSL
FIL
Download sequence
Identical sequences Q8I383 W7JUL2
gi|124506685|ref|XP_001351940.1| gi|23504967|emb|CAD51751.1| XP_001351940.1.26446 PFI0325c 5833.PFI0325c-1

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]