SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|156093375|ref|XP_001612727.1| from Protozoadb 2010_08

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|156093375|ref|XP_001612727.1|
Domain Number 1 Region: 64-92
Classification Level Classification E-value
Superfamily CCCH zinc finger 0.0000942
Family CCCH zinc finger 0.0036
Further Details:      
 
Weak hits

Sequence:  gi|156093375|ref|XP_001612727.1|
Domain Number - Region: 1-27
Classification Level Classification E-value
Superfamily CCCH zinc finger 0.000209
Family CCCH zinc finger 0.0052
Further Details:      
 
Domain Number - Region: 29-61
Classification Level Classification E-value
Superfamily CCCH zinc finger 0.000641
Family CCCH zinc finger 0.0033
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|156093375|ref|XP_001612727.1|
Sequence length 1471
Comment hypothetical protein [Plasmodium vivax SaI-1]
Sequence
MCKYALINKCDRGENCTFAHDISELRIKPDMRKTKLCKSYILGKCTDHNCIYAHSVNELR
EVGKPAICQLHREGRCIKGNQCRFAHSINDINTKLVQFYEEHMHEGEVEFSRLSRGGGVG
GGVGGGVGGSMRGSVGIGMESALRSGELLHLARQEKGREWKLSVNFTDGSSNSSSVSNQP
TRGCARTANRTSKTSSTCRGINRGMSGGMNRANLIKNSPCSAFSSNNILNLNCRKEEEKK
NEDLLLARDGKYTRLCAINMNMKSRQGGAYRYDERLLIQDGKEDYPLEGKFKKINYPENR
QQHDGNGPIESVRQNFTPSFNFRSILSFNGEEAGDNGNPSGAVDDRSGTSGDDSVNYGLA
RNVNAIGEESTLGLGNQGGTVRGGKFPQGGEFTRVRDSGKKVPPSESATFKEEKKKTQGS
ADKGDGLAHNADRFIIRGGLSWEGKAYPMGVLSGNSATDSSSISSGGRKALRGGDYDVGN
SPPELQQRGVHDDPTRTTPYDREVSHFIRGEGLSNELKKGNEKDDDEERSHLARYYHSAL
AVNRDDTFNFMGGSLLRSASTSEDVANRKECSTCKTYMAVDAQTVRGRLDGESGKLERES
KTGVTPKISSQSGTLNVREGGPPGGSGTPKGREEGDDGDAAQVRGKEEGTTGLASAPDPY
QEGGKRLLHMLALNTERRSTTGTAGHSHKGSPCCPPALDSERANGSSDHSGGRDSGGRHS
GGRDSGGRHSGGKDSGASNEEPAEGLTRYGSGLQGGSNSQYGSSNTVDTCAQNFDEVFFG
RVEGSGIGSDCGQSGGVTRAWVERASLGRCEDKKGNLHNENPHDGQLHNGNPHELLKYLQ
AMQQRSGCSSLERLQTEDGPFQRGVSGEHMEACMGSSTALGDYGGAKNHASFRPYNLFSL
FRESSPELRRLPDTCGGKSVSQRGVSQDEVSGRTGKGSSGSGGSGGSGGSGGSSYGVKFR
GEPLREKRFWRSGRSGRGGRGGRGGRDEVRSGDLPDGGGEQVGPAGYNLSGGSLEQGNQV
REEAKLLTATRREKNKNPLHRQVSSDSPVMNSHQDGSYDYVDYSNEEKMIASEHQLLYRW
LGLSSLSESGPLGVHTSGENILPPLHGEEAYLANLDAAGGIDHVLWSEKERSCWSKRSAC
RSSPSRSLIHGGARSQVKSKEEEFYPPSLGSIPIGHEEMGSDNVFMANYNWDDKEERLVS
TDEGAILIGSTEGAIMGSQASNHRTVHRKESDVAKKGETHFGKSDYGGDLTVGKIPPKRQ
LCEGVERSCAWGGEANLLDGQKWGGPKWSGQKWGGQKWDQVSHESLSRAHMGDGSVGECP
NGLLDTWSGGAMSFLGSDAEKENMSGRGRSQASHPSYGNHPNHGSHPNHPSHALTAAFLN
YDYEKGIEDDVVRSFLEERNFPAYDRLDSSCFYNFHVGNGRPLLSNSADGAVSGKESNSA
YDGVEVSAHADGAFCVDLSKDLDLHFLSQGG
Download sequence
Identical sequences A5KCD6
5855.PVX_001830 gi|156093375|ref|XP_001612727.1| XP_001612727.1.43797 gb|PVX_001830

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]