SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for jgi|Phypa1_1|21889|gw1.20.49.1 from Physcomitrella patens

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  jgi|Phypa1_1|21889|gw1.20.49.1
Domain Number 1 Region: 5-379
Classification Level Classification E-value
Superfamily RNI-like 1.41e-50
Family Cyclin A/CDK2-associated p19, Skp2 0.062
Further Details:      
 
Domain Number 2 Region: 586-862
Classification Level Classification E-value
Superfamily Protein kinase-like (PK-like) 4.35e-48
Family Protein kinases, catalytic subunit 0.00029
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) jgi|Phypa1_1|21889|gw1.20.49.1
Sequence length 866
Sequence
LPTSGLAGAISQAIGGLPHLVNLSLAHNELEGDISTILKLPNLMRLFLSGNAFSGSIKFE
TGSKLVVVDLSDNSFSGSIESPLPESDLLEMNLSGNEFSGRIPQELFQKTTLKTLDLSRN
KFGGPIPAVQVMVSLTTLKLSDNMLEGQIPPELFNEQTPQLREVDLSRNQLSGGLGLVTT
KVMSVLRLASNSMTGPLPSKIQSCSVVDLSDNHFSGSMSLSKWSANLRALNLSHNNLSGT
IDNASLVQMFALNVLDLSFNQLSGSIPPQFLASPSITELVLSHNQFEGSILNSLPSTSSP
LNVLDLSSNHLSGAIPDALGSYSKLLVLSLSTNHLEGTIPGRFSNLVQLQILDLSKNSLT
GSIPSRLSLQLKSFNVSGNNLSGTVPSNLAGFSTSSFYPGNPNLLLPHAPSSHDPGSGVQ
VSLGSSHKRVNLAVKVGLIVGITLGAVLIAALCLIIYFRKTLRPSMKLPIAQSIEQGTKP
KADAGEAVEQPGVPSSISRGSVKGTLAPPKARSDIKRDALDLQKSGESPMRTKWRTAGAP
SDDDASVSSEHPMVLKVKSPDRLAGDLFFLDATLLFTAEELSRAPAEVLGRSNHGTSYKA
TLDNGHILTVKWLREGLARNKKEFTREAKRFSGVKHPNVVSLRGYYWGPREHEKLLLSDF
ISRGSLAHHLYENSERKQPPLTWDQRLQIAVGVASGLSYLHNKHGVPHGNLKANNILLQG
PELTARVSDYSLHRLMTVAGTANQILNAGVLGYRSPELVATRKPKPSLASDVYALGVILL
ELLTGKGAGDIMSANSGAVDLPDWVRVAVKECRPVDCFDAVLVGLHREQEPPKSMYEVLD
IAFSCMTPQATRPTLKCILDQLVALA
Download sequence
Identical sequences A9RPG1
jgi|Phypa1_1|21889|gw1.20.49.1 3218.JGI21889 XP_001755898.1.60028

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]