SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for jgi|Rhoba1_1|37429|estExt_Genewise1Plus.C_8_t10392 from Rhodotorula graminis WP1 v1.0

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  jgi|Rhoba1_1|37429|estExt_Genewise1Plus.C_8_t10392
Domain Number 1 Region: 60-250,532-683
Classification Level Classification E-value
Superfamily Cysteine proteinases 2.16e-96
Family Ubiquitin carboxyl-terminal hydrolase, UCH 0.00000217
Further Details:      
 
Weak hits

Sequence:  jgi|Rhoba1_1|37429|estExt_Genewise1Plus.C_8_t10392
Domain Number - Region: 265-320
Classification Level Classification E-value
Superfamily Ubiquitin-like 0.028
Family Ubiquitin-related 0.02
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) jgi|Rhoba1_1|37429|estExt_Genewise1Plus.C_8_t10392
Sequence length 684
Sequence
MFAHGWSSSLHKGKTPSAPPAPPGPPAPASASKHHGGGIMNALHGALTRSKTAPAKGQRG
LVGLQNLGNTCFMNSAIQCMSNTKELQEYFLSGVYHNELNRDNPLGMRGQVAEAFGQLIE
RLWHGSGSSVAPREFKQALARFAPQFSGYGQQDSQELLAFLLDGTHEDLNRIKVKPATEA
PDWEGGGDKELVELAKTCWEQYRSRNDSVIVDLFQGQYRSTVVCPDCDKVSIKFDPFMYV
TTNLPVTKKWTGRVFVIPLDPARGVLCVDVEVPKSGTIKTLKQVIGQVIDVDPKCLVLSE
EWKCKFYKDWTDDENIIDVNTNNDRIIVYEVAAPYAQPRNRLHRAAPPAYDPAAPVFLPL
LNVKDGSASSTSKYGIRSSGDDFGSPFILSLSADEATSSAAIHRAVARQYSRVTKRGDEL
VQRVEEYLAELEAGESAGEQADDDADASTSTSPAAPAPAAAAAPAHQVEAPAAVAEARPL
VGMGHVLVAHWDEDAYERFFGGDASQWSATQEVVQPELAERRAQGRGGAKKVITLADCLG
EFTKEERLGEDDMWYCGACKEHKQATKKVELWKVPDVLVFALKRFSSSRYSRDKIDDLVD
FPIDGLDLTEWVEGDKVEHRLADEMGDAAPSVTAPDSLTYDLYAVSNHFGGLGGGHYTAF
AKNHENGRWYDFDDSRVSEIQPDR
Download sequence
Identical sequences A0A194S1J6
jgi|Rhoba1_1|37429|estExt_Genewise1Plus.C_8_t10392 XP_018270464.1.32311

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]