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Domain assignment for ENSRNOP00000025718 from Rattus norvegicus 76_5.0

Domain architecture

Domain assignment details

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Strong hits

Sequence:  ENSRNOP00000025718
Domain Number 1 Region: 1820-2066
Classification Level Classification E-value
Superfamily Ankyrin repeat 2.24e-52
Family Ankyrin repeat 0.0000000547
Further Details:      
 
Domain Number 2 Region: 937-1072
Classification Level Classification E-value
Superfamily Growth factor receptor domain 9.94e-16
Family Growth factor receptor domain 0.011
Further Details:      
 
Domain Number 3 Region: 412-536
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.00000000000141
Family Growth factor receptor domain 0.011
Further Details:      
 
Domain Number 4 Region: 594-725
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.00000000000314
Family Growth factor receptor domain 0.01
Further Details:      
 
Domain Number 5 Region: 1095-1229
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.00000000000573
Family Growth factor receptor domain 0.015
Further Details:      
 
Domain Number 6 Region: 757-799
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000000187
Family EGF-type module 0.0042
Further Details:      
 
Domain Number 7 Region: 821-954
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.000000000107
Family Growth factor receptor domain 0.012
Further Details:      
 
Domain Number 8 Region: 532-575
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000000000179
Family EGF-type module 0.0055
Further Details:      
 
Domain Number 9 Region: 1225-1274
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000000121
Family EGF-type module 0.011
Further Details:      
 
Domain Number 10 Region: 260-307
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000000444
Family EGF-type module 0.018
Further Details:      
 
Domain Number 11 Region: 291-419
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.00000000926
Family Growth factor receptor domain 0.012
Further Details:      
 
Domain Number 12 Region: 182-219
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000104
Family EGF-type module 0.0046
Further Details:      
 
Domain Number 13 Region: 65-105
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000137
Family EGF-type module 0.013
Further Details:      
 
Domain Number 14 Region: 1306-1344
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000566
Family EGF-type module 0.016
Further Details:      
 
Domain Number 15 Region: 1376-1416
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000666
Family EGF-type module 0.0082
Further Details:      
 
Domain Number 16 Region: 1264-1304
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000911
Family EGF-type module 0.0076
Further Details:      
 
Domain Number 17 Region: 1424-1456
Classification Level Classification E-value
Superfamily Notch domain 0.0000000955
Family Notch domain 0.0015
Further Details:      
 
Domain Number 18 Region: 716-759
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000001
Family EGF-type module 0.018
Further Details:      
 
Domain Number 19 Region: 222-264
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000000128
Family EGF-type module 0.0081
Further Details:      
 
Domain Number 20 Region: 146-187
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000000132
Family EGF-type module 0.024
Further Details:      
 
Domain Number 21 Region: 1503-1534
Classification Level Classification E-value
Superfamily Notch domain 0.000000222
Family Notch domain 0.0029
Further Details:      
 
Domain Number 22 Region: 108-144
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000000639
Family EGF-type module 0.01
Further Details:      
 
Domain Number 23 Region: 1060-1100
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000000675
Family EGF-type module 0.016
Further Details:      
 
Domain Number 24 Region: 28-64
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000219
Family EGF-type module 0.018
Further Details:      
 
Weak hits

Sequence:  ENSRNOP00000025718
Domain Number - Region: 1465-1497
Classification Level Classification E-value
Superfamily Notch domain 0.000641
Family Notch domain 0.0092
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSRNOP00000025718   Gene: ENSRNOG00000018835   Transcript: ENSRNOT00000025718
Sequence length 2471
Comment pep:known chromosome:Rnor_5.0:2:219662511:219793306:1 gene:ENSRNOG00000018835 transcript:ENSRNOT00000025718 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence 
MPALRPAALRALLWLWLCGAGPAHALQCRGGQEPCVNEGTCVTYHNGTGYCRCPEGFLGE
YCQHRDPCEKNRCQNGGTCVTQAMLGKATCRCAPGFTGEDCQYSTSHPCFVSRPCQNGGT
CHMLSWDTYECTCQVGFTGKQCQWTDVCLSHPCENGSTCSSVANQFSCRCPAGITGQKCD
ADINECDIPGRCQHGGTCLNLPGSYRCQCPQGFTGQHCDSPYVPCAPSPCVNGGTCRQTG
DFTSECHCLPGFEGSNCERNIDDCPNHKCQNGGVCVDGVNTYNCRCPPQWTGQFCTEDVD
ECLLQPNACQNGGTCTNRNGGYGCVCVNGWSGDDCSENIDDCAFASCTPGSTCIDRVASF
SCLCPEGKAGLLCHLDDACISNPCHKGALCDTNPLNGQYICTCPQGYKGADCTEDVDECA
MANSNPCEHAGKCVNTDGAFHCECLKGYAGPRCEMDINECHSDPCQNDATCLDKIGGFTC
LCMPGFKGVHCELEVNECQSNPCVNNGQCVDKVNRFQCLCPPGFTGPVCQIDIDDCSSTP
CLNGAKCIDHPNGYECQCATGFTGTLCDENIDNCDPDPCHHGQCQDGIDSYTCICNPGYM
GAICSDQIDECYSSPCLNDGRCIDLVNGYQCNCQPGTSGLNCEINFDDCASNPCLHGACV
DGINRYSCVCSPGFTGQRCNIDIDECASNPCRKGATCINDVNGFRCMCPEGPHHPSCYSQ
VNECLSSPCIHGNCTGGLSGYKCLCDAGWVGINCEVDKNECLSNPCQNGGTCNNLVNGYR
CTCKKGFKGYNCQVNIDECASNPCLNQGTCLDDVSGYTCHCMLPYTGKNCQTVLAPCSPN
PCENAAVCKEAPNFESFTCLCAPGWQGQRCTVDVDECVSKPCMNNGICHNTQGSYMCECP
PGFSGMDCEEDINDCLANPCQNGGSCVDKVNTFSCLCLPGFVGDKCQTDMNECLSEPCKN
GGTCSDYVNSYTCTCPAGFHGVHCENNIDECTESSCFNGGTCVDGINSFSCLCPVGFTGP
FCLHDINECSSNPCLNSGTCVDGLGTYRCTCPLGYTGKNCQTLVNLCSPSPCKNKGTCAQ
EKARPRCLCPPGWDGAYCDVLNVSCKAAALQKGVPVEHLCQHSGICINAGNTHHCQCPLG
YTGSYCEEQLDECASNPCQHGATCSDFIGGYRCECVPGYQGVNCEYEVDECQNQPCQNGG
TCIDLVNHFKCSCPPGTRGLLCEENIDDCAGGPHCLNGGQCVDRIGGYSCRCLPGFAGER
CEGDINECLSNPCSSEGSLDCIQLKNNYQCVCRSAFTGRHCETFLDVCPQKPCLNGGTCA
VASNVPDGFICRCPPGFSGARCQSSCGQVKCRRGEQCVHTASGPHCFCLNRKDCESGCAS
NPCQHGGTCYPQRQPPYYSCRCSPPFWGSHCESYTAPTSTPPATCLSQYCADKARDGICD
EACNSHACQWDGGDCSLTMEDPWANCTSSLRCWEYINNQCDELCNTAECLFDNFECQRNS
KTCKYDKYCADHFKDNHCDKGCNNEECGWDGLDCAADQPENLAEGILVIVVLLPPEQLLQ
DSRSFLRALGTLLHTNLRIKQDSQGALMVYPYYGEKSAAMKKQKVARRSLPDEQEQEIIG
SKVFLEIDNRQCVQDSDQCFKNTDAAAALLASHAIQGTLSYPLVSVVSESEDPRNTPLLY
LLAVAVVIILFLILLGVIMAKRKRKHGFLWLPEGFTLRRDSSNHKRREPVGQDAVGLKNL
SVQVSEANLIGSTTSEHWGDDEGPQPKKAKAEDDEALLSEDDPVDRRPWTQQHLEAADIR
RTPSLALTPPQAEQEVDVLDVNVRGPDGCTPLMLASLRGGSSDLSDEDEDAEDSSANIIT
DLVYQGASLQAQTDRTGEMALHLAARYSRADAAKRLLDAGADANAQDNMGRCPLHAAVAA
DAQGVFQILIRNRVTDLDARMNDGTTPLILAARLAVEGMVAELINCQADVNAVDDHGKSA
LHWAAAVNNVEATLLLLKNGANRDMQDNKEETPLFLAAREGSYEAAKILLDHFANRDITD
HMDRLPRDVARDRMHHDIVRLLDEYNVTPSPPGTVLTSALSPVLCGPNRSFLSLKHTPMG
KKARRPNTKSTMPTSLPNLAKEAKDVKGSRRKKCLNEKVQLSESSVTLSPVDSLESPHTY
VSDATSSPMITSPGILQASPTPLLAAAPAAPVHAQHALSFSNLHEMQPLAPGASTVLPSV
SQLLSHHHIVPPGSGSAGSLGRLHSVPVPSDWMNRVEMSETQYSEMFGMVLAPAEGTHPG
MAAPQSRAPEGKPIPTQREPLPPIVTFQLIPKGSLAQAAGAPQTQSGCPPAVAGPLPSMY
QIPEMARLPSVAFPPTMMPQQEGQVAQTIVPTYHPFPASVGKYPTPPSQHSYASSNAAER
TPNHGGHLQGEHPYLTPSPESPDQWSSSSPHSASDWSDVTTSPTPGGGGGGQRGPGTHMS
EPPHSNMQVYA
Download sequence
Identical sequences G3V8G9
ENSRNOP00000046610 NP_077334.2.100692 NP_077334.2.4139 10116.ENSRNOP00000025718 ENSRNOP00000025718

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.