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Domain assignment for ENSRNOP00000059245 from Rattus norvegicus 76_5.0

Domain architecture

Domain assignment details

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Strong hits

Sequence:  ENSRNOP00000059245
Domain Number 1 Region: 712-781
Classification Level Classification E-value
Superfamily TB module/8-cys domain 2.09e-19
Family TB module/8-cys domain 0.0007
Further Details:      
 
Domain Number 2 Region: 2097-2169
Classification Level Classification E-value
Superfamily TB module/8-cys domain 3.27e-19
Family TB module/8-cys domain 0.0005
Further Details:      
 
Domain Number 3 Region: 1447-1518
Classification Level Classification E-value
Superfamily TB module/8-cys domain 1.15e-18
Family TB module/8-cys domain 0.00043
Further Details:      
 
Domain Number 4 Region: 1812-1883
Classification Level Classification E-value
Superfamily TB module/8-cys domain 1.24e-18
Family TB module/8-cys domain 0.0000985
Further Details:      
 
Domain Number 5 Region: 1890-2024
Classification Level Classification E-value
Superfamily Growth factor receptor domain 1.08e-17
Family Growth factor receptor domain 0.013
Further Details:      
 
Domain Number 6 Region: 80-146
Classification Level Classification E-value
Superfamily TB module/8-cys domain 1.44e-17
Family TB module/8-cys domain 0.0017
Further Details:      
 
Domain Number 7 Region: 486-616
Classification Level Classification E-value
Superfamily Growth factor receptor domain 2.2e-17
Family Growth factor receptor domain 0.011
Further Details:      
 
Domain Number 8 Region: 296-420
Classification Level Classification E-value
Superfamily Growth factor receptor domain 2.98e-17
Family Growth factor receptor domain 0.0061
Further Details:      
 
Domain Number 9 Region: 1608-1733
Classification Level Classification E-value
Superfamily Growth factor receptor domain 4.24e-17
Family Growth factor receptor domain 0.02
Further Details:      
 
Domain Number 10 Region: 2212-2340
Classification Level Classification E-value
Superfamily Growth factor receptor domain 5.02e-17
Family Growth factor receptor domain 0.0092
Further Details:      
 
Domain Number 11 Region: 209-339
Classification Level Classification E-value
Superfamily Growth factor receptor domain 8.47e-17
Family Growth factor receptor domain 0.012
Further Details:      
 
Domain Number 12 Region: 788-918
Classification Level Classification E-value
Superfamily Growth factor receptor domain 7.38e-16
Family Growth factor receptor domain 0.018
Further Details:      
 
Domain Number 13 Region: 607-691
Classification Level Classification E-value
Superfamily TB module/8-cys domain 9.16e-16
Family TB module/8-cys domain 0.0014
Further Details:      
 
Domain Number 14 Region: 412-484
Classification Level Classification E-value
Superfamily TB module/8-cys domain 0.00000000000000275
Family TB module/8-cys domain 0.0014
Further Details:      
 
Domain Number 15 Region: 1287-1360
Classification Level Classification E-value
Superfamily TB module/8-cys domain 0.00000000000000288
Family TB module/8-cys domain 0.0000472
Further Details:      
 
Domain Number 16 Region: 1079-1213
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.00000000000000314
Family Growth factor receptor domain 0.014
Further Details:      
 
Domain Number 17 Region: 1170-1297
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.00000000000000549
Family Growth factor receptor domain 0.014
Further Details:      
 
Domain Number 18 Region: 954-1096
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.00000000000000659
Family Growth factor receptor domain 0.017
Further Details:      
 
Domain Number 19 Region: 1982-2099
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.00000000000000706
Family Growth factor receptor domain 0.0091
Further Details:      
 
Domain Number 20 Region: 2337-2453
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.000000000000832
Family Growth factor receptor domain 0.011
Further Details:      
 
Domain Number 21 Region: 1366-1421
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000000265
Family EGF-type module 0.00064
Further Details:      
 
Domain Number 22 Region: 1773-1826
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000000000118
Family EGF-type module 0.0066
Further Details:      
 
Domain Number 23 Region: 2168-2217
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000000000279
Family EGF-type module 0.0047
Further Details:      
 
Domain Number 24 Region: 918-966
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000000000305
Family EGF-type module 0.0089
Further Details:      
 
Domain Number 25 Region: 1525-1580
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000000268
Family EGF-type module 0.0024
Further Details:      
 
Domain Number 26 Region: 38-85
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000000419
Family EGF-type module 0.0045
Further Details:      
 
Domain Number 27 Region: 1-54
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000101
Family EGF-type module 0.01
Further Details:      
 
Domain Number 28 Region: 1735-1786
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000469
Family EGF-type module 0.0069
Further Details:      
 
Domain Number 29 Region: 1568-1606
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000000659
Family EGF-type module 0.01
Further Details:      
 
Weak hits

Sequence:  ENSRNOP00000059245
Domain Number - Region: 2547-2594
Classification Level Classification E-value
Superfamily Cadherin-like 0.0012
Family Cadherin 0.015
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSRNOP00000059245   Gene: ENSRNOG00000043219   Transcript: ENSRNOT00000066548
Sequence length 2633
Comment pep:known chromosome:Rnor_5.0:18:52284517:52414950:-1 gene:ENSRNOG00000043219 transcript:ENSRNOT00000066548 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence 
DVNECDLNPNICMFGECENTKGSFICHCQLGYSVKKGATGCTDIDECSVVPGICETGDCS
NTVGSYFCLCPRGFVTSTDGSRCIDQRTGTCFSGLVNGRCAQELPGRMAKAQCCCEPGRC
WGIGTIPEACPVRGSEEYRRLCLDGLPMGGIPGSSVSRPGGSGGNSNGYGPGGTGFLPIP
GGNGFSPGVGGAGVGAGGQGPIITGLTILNQTIDICKHHANLCLNGRCIPTVSSYRCECN
MGYKQDANGDCIDVDECTSNPCSHGDCVNTPGSYYCKCHAGFQRTPTKQACIDIDECIQN
GVLCKNGRCVNTDGRFQCICNAGFELTTDGENCVDHDECTTTNMCLNGMCINEDGSFKCV
CKPGFVLAPNGRYCTDVDECQTPGICMNGHCINNEGSFRCDCPPGLAVGVDGRVCVDTHM
RSTCYGEIKKGVCVRPFPGAVTKSECCCANPDYGFGEPCQPCPAKNSAEFHGLCSGGVGI
TVDGRDINECALDPDICANGICENLRGSYRCNCNSGYEPDASGRNCIDIDECLVNRLLCD
NGLCRNTPGSYSCTCPPGYVFRTETETCEDVNECESNPCVNGACRNNLGSFHCECSPGSK
LSSTGLICIDSLKGTCWLNIQDNRCEVNINGATLKSECCATLGTAWGSPCERCELDAACP
RGFARIKGVTCEDVNECEVFPGVCPNGRCVNNKGSFHCECPEGLTLDGTGRVCLDVRMEH
CFLKWDEDECVHPVPGKFRMDACCCAVGAAWGTECEECPKPGTKEYETLCPRGPGFANRG
DILTGRPFYKDINECKAFPGMCTYGKCRNTIGSFKCRCNSGFALDMEERNCTDIDECRIS
PDLCGSGICVNTPGSFDCECFEGYESGFMMMKNCMDIDECERNPLLCRGGTCVNTEGSFQ
CDCPLGHELSPSREDCIDINECSLSDNLCRNGKCVNMIGTYQCSCNPGYQATPDRQGCSD
IDECMIMNGGCDTQCTNSEGSYECSCSEGYALMPDGRSCADIDECENNPDICDGGQCTNI
PGEYRCLCYDGFMASMDMRTCIDVNECDLNPNICMFGECENTKGSFICHCQLGYSVKKGA
TGCTDVDECEIGAHNCDMHASCLNVPGSFKCSCREGWVGNGIKCIDLDECSNGTHQCSIN
AQCVNTPGSYRCACSEGFTGDGFTCSDVDECAENINLCENGQCLNVPGAYRCECEMGFTP
ASDSRSCQDIDECSFQNICVFGTCNNLPGMFHCICDDGYELDRTGGNCTDIDECADPINC
VNGLCVNTPGRYECNCPPDFQLNPTGVGCVDNRVGNCYLKFGPRGDGSLSCNTEVGVGVS
RSSCCCSLGKAWGNPCETCPPVNSTEYYTLCPGGEGFRPNPITIILEDIDECQELPGLCQ
GGNCINTFGSFQCECPQGYYLSEETRICEDIDECFAHPGVCGPGTCYNTLGNYTCICPPE
YMQVNGGHNCMDMRKSFCYRSYNGTTCENELPFNVTKRMCCCTYNVGKAWNKPCEPCPTP
GTADFKTICGNIPGFTFDIHTGKAVDIDECKEIPGICANGVCINQIGSFRCECPTGFSYN
DLLLVCEDIDECSNGDNLCQRNADCINSPGSYRCECAAGFKLSPNGACVDRNECLEIPNV
CSHGLCVDLQGSYQCICNNGFKASQDQTMCMDVDECERHPCGNGTCKNTVGSYNCLCYPG
FELTHNNDCLDIDECSSFFGQVCRNGRCFNEIGSFKCLCNEGYELTPDGKNCIEDTNECV
ALPGSCSPGTCQNLEGSFRCICPPGYEVKSENCIDINECDEDPNICLFGSCTNTPGGFQC
ICPPGFVLSDNGRRCFDTRQSFCFTNFENGKCSVPKAFNTTKAKCCCSKMPGEGWGDPCE
LCPKDDEVAFQDLCPYGHGTVPSLHDTREDVNECLESPGICSNGQCINTDGSFRCECPMG
YNLDYSGVRCVDTDECSIGNPCGNGTCANVIGSFECNCNEGFEPGPMMNCEDINECAQNP
LLCAFRCMNTFGSYECTCPVGYALREDQKMCKDLDECAEGLHDCESRGMMCKNLIGTFMC
ICPPGMARRPDGEGCVDENECRTKPGICENGRCVNIIGSYRCECNEGFQSSSSGTECLDN
RQGLCFAEVLQTMCQMASSSRNLVTKSECCCDGGRGWGHQCELCPLPGTAQYKKICPHGP
GYATDGRDIDECKVMPSLCTNGQCVNTMGSFRCFCKVGYTTDISGTACVDLDECSQSPKP
CNFICKNTEGSYQCSCPRGYVLQEDGKTCKDLDECQTKQHNCQFLCVNTLGGFTCKCPPG
FTQHHTACIDNNECGSQPSLCGAKGICQNTPGSFSCECQRGFSLDASGLNCEDVDECDGN
HRCQHGCQNILGGYRCGCPQGYVQHYQWNQCVDENECSNPGACGSASCYNTLGSYKCACP
SGFSFDQFSSACHDVNECSSSKNPCSYGCSNTEGGYLCGCPPGYFRVGQGHCVSGMGFNK
GQYLSVDSEAEDDENALSPEACYECKINGYAKKDGRRKRSAPEPEPASAEEQISLESVAM
DSPVNMKFNLSGLGSKEHILELVPAIEPLNNHIRYVISQGNDDGVFRIHQRNGLSYLHTA
KKKLTPGTYTLEITSVPLYGKKELRKLEERNEDSYLLGVLGEALRMRLQIQLY
Download sequence
Identical sequences ENSRNOP00000059245

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.