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  Home > Genomes > Rattus norvegicus 76_5.0 > ENSRNOP00000066394

Domain assignment for ENSRNOP00000066394 from Rattus norvegicus 76_5.0

Domain architecture

Domain assignment details

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Strong hits

Sequence:  ENSRNOP00000066394
Domain Number 1 Region: 2233-2497
Classification Level Classification E-value
Superfamily YWTD domain 3.66e-51
Family YWTD domain 0.00000215
Further Details:      
 
Domain Number 2 Region: 472-733
Classification Level Classification E-value
Superfamily YWTD domain 1.27e-44
Family YWTD domain 0.0000106
Further Details:      
 
Domain Number 3 Region: 1422-1666
Classification Level Classification E-value
Superfamily YWTD domain 6.8e-39
Family YWTD domain 0.0000111
Further Details:      
 
Domain Number 4 Region: 3090-3360
Classification Level Classification E-value
Superfamily YWTD domain 8.76e-38
Family YWTD domain 0.0000279
Further Details:      
 
Domain Number 5 Region: 1118-1344
Classification Level Classification E-value
Superfamily YWTD domain 9.02e-35
Family YWTD domain 0.0000369
Further Details:      
 
Domain Number 6 Region: 780-1045
Classification Level Classification E-value
Superfamily YWTD domain 7.06e-24
Family YWTD domain 0.00052
Further Details:      
 
Domain Number 7 Region: 1768-1809
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000157
Family LDL receptor-like module 0.00079
Further Details:      
 
Domain Number 8 Region: 2178-2226
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000000159
Family EGF-type module 0.008
Further Details:      
 
Domain Number 9 Region: 299-340
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000275
Family LDL receptor-like module 0.00082
Further Details:      
 
Domain Number 10 Region: 2020-2061
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000275
Family LDL receptor-like module 0.0011
Further Details:      
 
Domain Number 11 Region: 181-218
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000484
Family LDL receptor-like module 0.00073
Further Details:      
 
Domain Number 12 Region: 2060-2102
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000759
Family LDL receptor-like module 0.00095
Further Details:      
 
Domain Number 13 Region: 2661-2700
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000969
Family LDL receptor-like module 0.00049
Further Details:      
 
Domain Number 14 Region: 139-177
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000982
Family LDL receptor-like module 0.0011
Further Details:      
 
Domain Number 15 Region: 2619-2662
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000275
Family LDL receptor-like module 0.00085
Further Details:      
 
Domain Number 16 Region: 2752-2789
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000301
Family LDL receptor-like module 0.001
Further Details:      
 
Domain Number 17 Region: 2787-2827
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000314
Family LDL receptor-like module 0.00092
Further Details:      
 
Domain Number 18 Region: 1938-1974
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000445
Family LDL receptor-like module 0.00063
Further Details:      
 
Domain Number 19 Region: 2544-2580
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000484
Family LDL receptor-like module 0.00098
Further Details:      
 
Domain Number 20 Region: 2831-2868
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000511
Family LDL receptor-like module 0.001
Further Details:      
 
Domain Number 21 Region: 1890-1931
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000641
Family LDL receptor-like module 0.00093
Further Details:      
 
Domain Number 22 Region: 2103-2143
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000641
Family LDL receptor-like module 0.0017
Further Details:      
 
Domain Number 23 Region: 96-136
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000072
Family LDL receptor-like module 0.001
Further Details:      
 
Domain Number 24 Region: 54-92
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000759
Family LDL receptor-like module 0.0013
Further Details:      
 
Domain Number 25 Region: 387-431
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000000000838
Family EGF-type module 0.012
Further Details:      
 
Domain Number 26 Region: 1732-1776
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000995
Family LDL receptor-like module 0.00081
Further Details:      
 
Domain Number 27 Region: 2874-2908
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000196
Family LDL receptor-like module 0.0013
Further Details:      
 
Domain Number 28 Region: 2959-2996
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000262
Family LDL receptor-like module 0.00083
Further Details:      
 
Domain Number 29 Region: 2145-2193
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000000359
Family EGF-type module 0.017
Further Details:      
 
Domain Number 30 Region: 1846-1892
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000406
Family LDL receptor-like module 0.0014
Further Details:      
 
Domain Number 31 Region: 1052-1100
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000000446
Family EGF-type module 0.025
Further Details:      
 
Domain Number 32 Region: 219-257
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000537
Family LDL receptor-like module 0.0015
Further Details:      
 
Domain Number 33 Region: 416-463
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000000629
Family EGF-type module 0.0078
Further Details:      
 
Domain Number 34 Region: 260-297
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000681
Family LDL receptor-like module 0.00073
Further Details:      
 
Domain Number 35 Region: 2582-2623
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000126
Family LDL receptor-like module 0.0016
Further Details:      
 
Domain Number 36 Region: 2916-2954
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000393
Family LDL receptor-like module 0.0017
Further Details:      
 
Domain Number 37 Region: 344-380
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000537
Family LDL receptor-like module 0.0024
Further Details:      
 
Domain Number 38 Region: 1977-2021
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000105
Family LDL receptor-like module 0.00089
Further Details:      
 
Domain Number 39 Region: 1814-1850
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000017
Family LDL receptor-like module 0.0016
Further Details:      
 
Domain Number 40 Region: 2715-2748
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000301
Family LDL receptor-like module 0.0018
Further Details:      
 
Domain Number 41 Region: 3041-3074
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000454
Family EGF-type module 0.0098
Further Details:      
 
Domain Number 42 Region: 3001-3042
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000168
Family EGF-type module 0.014
Further Details:      
 
Weak hits

Sequence:  ENSRNOP00000066394
Domain Number - Region: 3415-3446
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000168
Family EGF-type module 0.026
Further Details:      
 
Domain Number - Region: 735-780
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000187
Family EGF-type module 0.011
Further Details:      
 
Domain Number - Region: 1375-1420
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000491
Family EGF-type module 0.0087
Further Details:      
 
Domain Number - Region: 6-57
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000503
Family EGF-type module 0.011
Further Details:      
 
Domain Number - Region: 2502-2563
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00135
Family EGF-type module 0.015
Further Details:      
 
Domain Number - Region: 1687-1748
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0152
Family EGF-type module 0.023
Further Details:      
 
Domain Number - Region: 3360-3445
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.0471
Family Growth factor receptor domain 0.019
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSRNOP00000066394   Gene: ENSRNOG00000047711   Transcript: ENSRNOT00000070816
Sequence length 3692
Comment pep:novel chromosome:Rnor_5.0:3:62271279:62359283:-1 gene:ENSRNOG00000047711 transcript:ENSRNOT00000070816 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence 
SGSNYCSQTTHANGDCSHFCFPVPNFQRVCGCPYGMKLQRDQMTCEGDPAREPPTQQCGS
LSFPCNNGKCVPSFFRCDGVDDCHDNSDEHQCGVFNNTCSPSAFACVRGGQCIPGQWHCD
RQNDCLDGSDEQNCPTHATSSTCPSTSFTCDNHVCIPKDWVCDTDNDCSDGSDEKNCQAS
GTCQPTQFRCPDHRCISPLYVCDGDKDCADGSDEAGCVLNCTSAQFKCADGSSCINSRYR
CDGVYDCRDNSDEAGCPTRPPGMCHLDEFQCQGDGTCIPNTWECDGHPDCIHGSDEHTGC
VPKTCSPTHFLCDNGNCIYKAWICDGDNDCRDMSDEKDCPTQPFHCPSTQWQCPGYSTCI
NLSALCDGVFDCPNGTDESPLCNQDSCSHFNGGCTHQCMQGPFGATCLCPLGYQLANDTK
TCEDINECDIPGFCSQHCVNMRGSFRCACDPEYTLESDGRTCKVTGSENPLLVVASRDKI
IVDNITAHTHNLYSLVQDVSFVVALDFDSVTGRVFWSDLLQGKTWSVFQNGTDKRVVHDS
GLSVTEMIAVDWIGRNLYWTDYALETIEVSKIDGSHRTVLISKNVTKPRGLALDPRMGDN
VMFWSDWGHHPRIERASMDGTMRTVIVQEKIYWPCGLSIDYPNRLIYFMDAYLDYIEFCD
YDGHNRRQVIASDLVLHHPHALTLFEDFVYWTDRGTRQVMQANKWHGGNQSVVMYSVHQP
LGITAIHPSRQPPSRNPCASASCSHLCLLSAQAPRHYSCACPSGWNLSDDSVNCVRGDQP
FLMSVRDNIIFGISLDPEVKSNDAMVPISGIQHGYDVEFDDSEQFIYWVENPGLWIRILA
SGANVSPVPSCLRLFLSSWKQSVTVRKVQGRSPGSREERVLTLKGDTRYGKTLIANDGTP
LGVGFPVGIAVDPARGETIWSDHGTDSGVPAKIASANMDGTSLKILFTGNLQHLEVVTLD
IQEQKLYWAVTSRGVIERGNVDGTERMILVHHLAHPWGLVVYGSFLYYSDEQYEVIERVD
KSSGNNKVVLRDNVPYLRGLRVYHRRNAADSSNGCSNNPNACQQICLPVPGGMFSCACAS
GFKLSPDGRSCSPYNSFMVVSMLPAVRGFSLELSDHSEAMVPVAGQGRNVLHADVDVANG
FIYWCDFSSSVRSSNGIRRIKPDGSNFTNVVTYGIGANGIRGVALDWAAGNLYFTNAFVY
ETLIEVLRINTTYRRVLLKVSVDMPRHIIVDPKHRYLFWADYGQKPKIERSFLDCTNRTV
LVSEGIVTPRGLAMDHDTGYIYWVDDSLDLIARIHLDGGESQVVRYGSRYPTPYGITVFG
ESIIWVDRNLKKVFQASKQPGNTDPPVVIRDKINLLRDVTIFDEHAQPLSPAELNNNPCL
QSNGGCSHFCFALPELPTPRCGCAFGTLGNDGKSCATSQEDFLIYSLNNSLRSLHFDPRD
HSLPFQVISVAGTAIALDYDRRNNRIFFTQKLNSLRGQISYVSLYSGSSSPTVLLSNIGV
TDGIAFDWINRRIYYSDFSNQTINSMAEDGSNRAVIARVSKPRAIVLDPCRGYMYWTDWG
TNAKIERATLGGNFRVPIVNTSLVWPNGLALDLETDLLYWADASLQKIERSTLTGTNREV
VVSTAFHSFGLTVYGQYIYWTDLYTRKIYRANKYDGSDLVAMTTRLPTQPSGISTVVKTQ
RQQCSNPCDQFNGGCSHICAPGPNGAECQCPHEGNWYLANDNKYCVVDTGTRCNQLQFTC
LNGHCINQDWKCDNDNDCGDGSDELPTVCAFHTCRSTAFTCGNGRCVPYHYRCDYYNDCG
DNSDEAGCLFRNCNSTTEFTCSNGRCIPLSYVCNGINNCHDNDTSDEKNCPPHTCPPDFT
KCQTTNICVPRAFLCDGDNDCGDGSDENPIYCASHTCRSNEFQCLSPQRCIPSYWFCDGE
ADCADGSDEPDTCGHSVNTCRASQFQCDNGRCISGNWVCDGDNDCGDMSDEDQRHHCELQ
NCSSTQFTCVNSRPPNRRCIPQYWVCDGDADCSDALDELQNCTMRTCSAGEFSCANGRCV
RQSFRCDRRNDCGDYSDERGCSYPPCHANQFTCQNGRCIPRFFVCDEDNDCGDGSDEQEH
LCHTPEPTCPLHQFRCDNGHCIEMGRVCNHVDDCSDNSDEKGCGINECLDSSISRCDHNC
TDTITSFYCSCLPGYKLMSDKRSCVDIDECKESPQLCSQKCENVVGSYICKCAPGYIREP
DGKSCRQNSNIEPYLIFSNRYYIRNLTTDGSSYSLILQGLGNVVALDFDRVEKRLYWIDA
EKQIIERMFLNKTNRETIINHRLRRAESLAVDWVSRKLYWLDAILDCLFVSDLEGRHRKM
IAQHCVDANNTFCFEHPRGIVLHPQRGHVYWADWGVHAYIGRIGMDGTNKSVIISTKIEW
PNAITIDYTNDLLYWADAHLGYIEFSDLEGHHRHTVYDGSLPHPFALTIFEDTVFWTDWN
TRTVEKGNKYDGSGRVVLVNTTHKPFDIHVYHPYRQPIMSNPCGTNNGGCSHLCLIKAGG
RGFTCACPDDFQTVQLRDRTLCMPMCSSTQFLCGNNEKCIPIWWKCDGQKDCSDGSDEPD
LCPHRFCRLGQFQCRDGNCTSPQALCNARQDCADGSDEDRVLCEHHRCESNEWQCANKRC
IPQSWQCDSVNDCLDNSDEDTSHCASRTCRPGQFKCNNGRCIPQSWKCDVDNDCGDYSDE
PIDECTTAAYNCDNHTEFSCKTNYRCIPQWAVCNGFDDCRDNSDEQGCESVPCHPSGDFR
CANHHCIPLRWKCDGTDDCGDNSDEENCVPRECSESEFRCADQQCIPSRWVCDQENDCGD
NSDERDCEMKTCHPEHFQCTSGHCVPKALACDGRADCLDASDESACPTRFPNGTYCPAAM
FECKNHVCIQSFWICDGENDCVDGSDEEIHLCFNIPCESPQRFRCDNSRCVYGHQLCNGV
DDCGDGSDEKEEHCRKPTHKPCTDTEYKCSNGNCISQHYVCDNVNDCGDLSDETGCNLGD
NRTCAENICEQNCTQLSSGGFICSCRPGFKPSTLDKNSCQDINECEEFGICPQSCRNSKG
SYECFCVDGFKSMSTHYGERCAADGSPPLLLLPENVRIRKYNTSSEKFSEYLEEEEHIQT
IDYDWDPEHIGLSVVYYTVLAQGSQFGAIKRAYIPNFESGSNNPIREVDLGLKYLMQPDG
LAVDWVGRHIYWSDAKSQRIEVATLDGRYRKWLITTQLDQPAAIAVNPKLGLMFWTDQGK
QPKIESAWMNGEHRSVLVSENLGWPNGLSIDYLNDDRVYWSDSKEDVIEAIKYDGTDRRL
IINEAMKPFSLDIFEDKLYWVAKEKGEVWRQNKFGKENKEKVLVVNPWLTQVRIFHQLRY
NQSVSNPCKQVCSHLCLLRPGGYSCACPQGSDFVTGSTVQCDAASELPVTMPPPCRCMHG
GNCYFDENELPKCKCSSGYSGEYCEVGLSRGIPPGTTMAVLLTFVIVIIVGALVLVGLFH
YRKTGSLLPTLPKLPSLSSLAKPSENGNGVTFRSGADVNMDIGVSPFGPETIIDRSMAMN
EHFVMEVGKQPVIFENPMYAAKDNTSKVALAVQGPSTGAQVTVPENVENQNYGRPIDPSE
IVPEPKPASPGADEIQGKKWNIFKRKPKQTTNFENPIYAEMDSEVKDAVAVAPPPSPSLP
AKASKRNLTPGYTATEDTFKDTANLVKEDSDV
Download sequence
Identical sequences ENSRNOP00000066394

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.