SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSRNOP00000003733 from Rattus norvegicus 76_5.0

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSRNOP00000003733
Domain Number 1 Region: 39-156
Classification Level Classification E-value
Superfamily C-type lectin-like 1.29e-30
Family C-type lectin domain 0.00000527
Further Details:      
 
Domain Number 2 Region: 252-317
Classification Level Classification E-value
Superfamily Complement control module/SCR domain 0.000000000000459
Family Complement control module/SCR domain 0.0028
Further Details:      
 
Domain Number 3 Region: 197-261
Classification Level Classification E-value
Superfamily Complement control module/SCR domain 0.0000000000032
Family Complement control module/SCR domain 0.0019
Further Details:      
 
Domain Number 4 Region: 157-194
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000144
Family EGF-type module 0.0039
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSRNOP00000003733   Gene: ENSRNOG00000002776   Transcript: ENSRNOT00000003733
Sequence length 372
Comment pep:known chromosome:Rnor_5.0:13:87249243:87267197:1 gene:ENSRNOG00000002776 transcript:ENSRNOT00000003733 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MVFPWRCQSAQRGSWSFLKLWIWTLLCCDLLPHHGTHCWTYHYSERSMNWENARKFCKHN
YTDLVAIQNKREIEYLEKTLPKNPTYYWIGIRKIGKTWTWVGTNKTLTKEAENWGTGEPN
NKKSKEDCVEIYIKRERDSGKWNDDACHKRKAALCYTASCQPESCNRHGECVETINNNTC
ICDPGYYGPQCQYVIQCEPLKAPELGTMNCIHPLGDFSFQSQCAFNCSEGSELLGNAKTE
CGASGNWTYLEPICQVIQCMPLAAPDLGTMECSHPLANFSFTSACTFTCSEETDLIGERK
TVCRSSGSWSSPSPICQKTKRSFSKIKEGDYNPLFIPVAVMVTAFSGLAFIIWLARRLKK
GKKSQERMDDPY
Download sequence
Identical sequences Q63762
NP_062050.3.100692 NP_062050.3.4139 10116.ENSRNOP00000003733 ENSRNOP00000003733 ENSRNOP00000003733

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]