SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSRNOP00000025173 from Rattus norvegicus 69_3.4

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSRNOP00000025173
Domain Number 1 Region: 30-486
Classification Level Classification E-value
Superfamily Periplasmic binding protein-like I 1.01e-89
Family L-arabinose binding protein-like 0.00013
Further Details:      
 
Domain Number 2 Region: 497-542
Classification Level Classification E-value
Superfamily TNF receptor-like 0.00000388
Family TNF receptor-like 0.013
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSRNOP00000025173   Gene: ENSRNOG00000018608   Transcript: ENSRNOT00000025173
Sequence length 824
Comment pep:known chromosome:RGSC3.4:5:158457995:158474013:1 gene:ENSRNOG00000018608 transcript:ENSRNOT00000025173 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MGPQARTLCLLSLLLHVLPKPGKLVENSDFHLAGDYLLGGLFTLHANVKSISHLSYLQVP
KCNEFTMKVLGYNLMQAMRFAVEEINNCSSLLPGVLLGYEMVDVCYLSNNIHPGLYFLAQ
DDDLLPILKDYSQYMPHVVAVIGPDNSESAITVSNILSHFLIPQITYSAISDKLRDKRHF
PSMLRTVPSATHHIEAMVQLMVHFQWNWIVVLVSDDDYGRENSHLLSQRLTKTSDICIAF
QEVLPIPESSQVMRSEEQRQLDNILDKLRRTSARVVVVFSPELSLYSFFHEVLRWNFTGF
VWIASESWAIDPVLHNLTELRHTGTFLGVTIQRVSIPGFSQFRVRRDKPGYPVPNTTNLR
TTCNQDCDACLNTTKSFNNILILSGERVVYSVYSAVYAVAHALHRLLGCNRVRCTKQKVY
PWQLLREIWHVNFTLLGNRLFFDQQGDMPMLLDIIQWQWDLSQNPFQSIASYSPTSKRLT
YINNVSWYTPNNTVPVSMCSKSCQPGQMKKSVGLHPCCFECLDCMPGTYLNRSADEFNCL
SCPGSMWSYKNDITCFQRRPTFLEWHEVPTIVVAILAALGFFSTLAILFIFWRHFQTPMV
RSAGGPMCFLMLVPLLLAFGMVPVYVGPPTVFSCFCRQAFFTVCFSICLSCITVRSFQIV
CVFKMARRLPSAYSFWMRYHGPYVFAFITAXRTDPDDPNIMILSCHPNYRNGLLFNTSMD
LLLSVLGFSFAYMGKELPTNYNEAKFITLSMTFSFTSSISLCTFMSVHDGVLVTIMDLLV
TVLNFLAIGLGYFGPKCYMILFYPERNTSAYFNSMIQGYTMRKS
Download sequence
Identical sequences 10116.ENSRNOP00000025173 ENSRNOP00000025173

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]