SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSRNOP00000032871 from Rattus norvegicus 69_3.4

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSRNOP00000032871
Domain Number 1 Region: 51-488
Classification Level Classification E-value
Superfamily Periplasmic binding protein-like I 1.41e-99
Family L-arabinose binding protein-like 0.0049
Further Details:      
 
Weak hits

Sequence:  ENSRNOP00000032871
Domain Number - Region: 557-765
Classification Level Classification E-value
Superfamily Calcium ATPase, transmembrane domain M 0.000123
Family Calcium ATPase, transmembrane domain M 0.021
Further Details:      
 
Domain Number - Region: 512-548
Classification Level Classification E-value
Superfamily TNF receptor-like 0.0141
Family TNF receptor-like 0.017
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSRNOP00000032871   Gene: ENSRNOG00000022955   Transcript: ENSRNOT00000036914
Sequence length 802
Comment pep:known chromosome:RGSC3.4:18:34482:61266:-1 gene:ENSRNOG00000022955 transcript:ENSRNOT00000036914 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MLILMVIFFLLNIPFLLANFMDPRCFWKINLNEIKDEVLGMTCSFILETVQKTMDKDYFN
QTLNVLNTTTNHKYALALAFTVDEINRNPDLLPNMSLIIKYNLGHCDGKTVTTLSDLFNP
NNHLHFPNYLCNEGIMCLVLLTGPHWRASLYLWISVYVYLSPHFLQLSYGPFYSIFSDNE
QYPYLYQMGPKDSSLALAMVSFIIYFKWNWVGLFISDDDQGNQFLSELKKESQTKDICFA
FVNMVSVSDVSYYHKTEMYYNQIVMSSTKVIIIYGETNSIIELSFRMWSSPVKQRIWVTT
KQFDCPTSKRDLTHGTFYGTLTFLHHYGEISGFKNFVQTRYNLRSTDLYLVTPEWKYFNY
EASASNCKILRNYLSNISLEWLMEQKFDMSFSDYSHNIYNAVYAIAHALHEKNLQEVENQ
AINNAKGENTHCLKLNSFLRKTHFTNSLGNRVIMKQREVVHGDYNIVHMWNFSQRLGIKV
KIGQFSPHFPQGQQLHLYVDMTELATGSRKMPSSVCSADCHPGFRRIWKEEMAVCCFVCN
PCPENEISNETMVVFWVFVKHHDTPIVKANNRILSYLLIVSLMFCFLCSFFFIGYPNRAT
CILQQITFGIFFTVAISTVLAKTITVVLAFKVTDPGRQLRIFLVSGTPNYIIPICSLLQC
ILCAIWLAVSPPFVDIDEHSEHGHIIIVCNKGSITAFYCVLGYLACLAFGSFTIAFLAKN
LPDTFNEAKFLTFSMLVFCAVWVTFLPVYHSTKGKVMVAVEIFSILASSAGMLGCIFAPK
VYIILMRPDRNSIHKIREKSYF
Download sequence
Identical sequences G3V911
ENSRNOP00000032871 10116.ENSRNOP00000032871 ENSRNOP00000032871

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]