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Domain assignment for ENSRNOP00000042646 from Rattus norvegicus 69_3.4

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSRNOP00000042646
Domain Number 1 Region: 67-512
Classification Level Classification E-value
Superfamily Periplasmic binding protein-like I 2.07e-113
Family L-arabinose binding protein-like 0.00068
Further Details:      
 
Weak hits

Sequence:  ENSRNOP00000042646
Domain Number - Region: 520-566
Classification Level Classification E-value
Superfamily TNF receptor-like 0.00113
Family TNF receptor-like 0.0089
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSRNOP00000042646   Gene: ENSRNOG00000040198   Transcript: ENSRNOT00000041244
Sequence length 864
Comment pep:known chromosome:RGSC3.4:12:1141669:1252998:1 gene:ENSRNOG00000040198 transcript:ENSRNOT00000041244 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MMLLLIFMFLLLQYSSDVYSFDRSSCAAKTKTSVYKDGDMVLAAFLPLFTITIDSASDNQ
SNNNFYIHQHVKECKFIHSFHFIVLAMVYAIEEINRNPHILPNVSLGYDIYNVLFNEWWI
LNRCITWLSGPKKYVPNYTCRREMKSIAALTGISWIISTNIGTLLELYKYPQLTIGSFDP
NLNNHEQFHDIYQIAYKDMSLTHGIVSLLNYFHWNWVGLIVSEGQNGFQIISELRAEMDR
NKICVDFVEMIRVSEVSYLPSYLLSPTHLAKSTANVIITYGDSDFMRGFLFYLRQILVTR
KVWIMNSDWDVIIQSKHFILQSFHGSLIFAHHHKETSGYRNFIQTVHPSKYPEDFYLTRF
WFYFFNCSFADDDCNTLENCLPNASLHETPGSHFDMVMTEFAYNIYNAVYAVAHSLHKML
LQQVEVTPVKEAEDLIFSAWQLHPFLKNMQFTNPAGEQVNLNEKMKLNADYDILNYWNFP
EGLQLKVKVGQFSPYGPLGQQLSLSEDTIEWPTEITETPRSICSESCGPGFRKSLPEGKV
SCCFDCVPCPENEISNETDVDQCMQCLDHQYANTAQNHCLQKSMTFLDYEDPMGISLSCI
ALCFSALTSLVLSIFLKQKNTPIVKANNRTLTYILLIALNFCFLCSFLFIGHPNTATCIL
QQTTFAVVFTVAVSTVLAKTITVVLAFKVTAPGRRIRWLLVTRAPNFIVPICTLIQIILC
GVWLGNSPPFIDTDTRSEHEHIIIMCNKGSVTAFYCVQGYLGALALGSFTLAFLARNLPD
TFNEAKFLTFSMLVFCSVWVTFLPVYHSTKGKHMVVVEVFSILVSSAGLLGCIFAPKCYI
ILLRPQRNSIQGHRDKIHYNYKTS
Download sequence
Identical sequences 10116.ENSRNOP00000042646 ENSRNOP00000042646 NP_001092950.1.100692 NP_001092950.1.4139

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