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Domain assignment for ENSRNOP00000043580 from Rattus norvegicus 69_3.4

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSRNOP00000043580
Domain Number 1 Region: 385-646
Classification Level Classification E-value
Superfamily YWTD domain 6.02e-47
Family YWTD domain 0.00000555
Further Details:      
 
Domain Number 2 Region: 699-958
Classification Level Classification E-value
Superfamily YWTD domain 4.45e-45
Family YWTD domain 0.0000183
Further Details:      
 
Domain Number 3 Region: 255-270,305-374,639-695
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.00000000000377
Family Growth factor receptor domain 0.025
Further Details:      
 
Domain Number 4 Region: 91-133
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000000969
Family LDL receptor-like module 0.0013
Further Details:      
 
Domain Number 5 Region: 1256-1297
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000000969
Family LDL receptor-like module 0.00082
Further Details:      
 
Domain Number 6 Region: 1138-1175
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000017
Family LDL receptor-like module 0.00073
Further Details:      
 
Domain Number 7 Region: 16-52
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000275
Family LDL receptor-like module 0.001
Further Details:      
 
Domain Number 8 Region: 1096-1134
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000288
Family LDL receptor-like module 0.0011
Further Details:      
 
Domain Number 9 Region: 1053-1093
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000209
Family LDL receptor-like module 0.001
Further Details:      
 
Domain Number 10 Region: 1011-1049
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000236
Family LDL receptor-like module 0.0013
Further Details:      
 
Domain Number 11 Region: 1176-1214
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000017
Family LDL receptor-like module 0.0015
Further Details:      
 
Domain Number 12 Region: 211-249
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000183
Family LDL receptor-like module 0.0011
Further Details:      
 
Domain Number 13 Region: 1220-1255
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000262
Family LDL receptor-like module 0.0008
Further Details:      
 
Domain Number 14 Region: 171-207
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000458
Family LDL receptor-like module 0.0009
Further Details:      
 
Domain Number 15 Region: 48-91
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000772
Family LDL receptor-like module 0.0014
Further Details:      
 
Domain Number 16 Region: 1301-1337
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000131
Family LDL receptor-like module 0.0024
Further Details:      
 
Domain Number 17 Region: 136-170
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000055
Family LDL receptor-like module 0.0018
Further Details:      
 
Weak hits

Sequence:  ENSRNOP00000043580
Domain Number - Region: 963-1014
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000168
Family EGF-type module 0.011
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSRNOP00000043580   Gene: ENSRNOG00000030487   Transcript: ENSRNOT00000050675
Sequence length 1353
Comment pep:known chromosome:RGSC3.4:3:51644527:51724478:-1 gene:ENSRNOG00000030487 transcript:ENSRNOT00000050675 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MLLLAIAACLEPVSSQECGSGNFRCDNGYCIPASWRCDGTRDCLDDTDEIGCPPRSCESG
LFLCPAEGTCIPSSWVCDEDKDCSDGADEQQNCAGTTCSAQQMTCSNGQCIPSEYRCDHV
SDCPDGSDERNCHYPTCDQLTCANGACYNTSQRCDQKVDCRDSSDEANCTTLCSQKEFEC
GSGECILRAYVCDHDNDCEDNSDERNCNYDTCGGHQFTCSNGQCINQNWVCDGDDDCQDS
GDEDGCESNQSHHRCYPREWACPGSGRCISIDKVCDGVPDCPEGDDENNVTSGRTCGMGV
CSVLNCEYQCHQTPFGGECFCPPGHIINSNDSRTCIDFDDCQIWGICDQKCENRQGRHQC
LCEEGYILERGQHCKSSDSFSAASVIFSNGRDLLVGDLHGRNFRILAESKNRGMVMGVDF
HYQKHRVFWTDPMQEKVFSTDINGLNTQEILNVSVDTPENLAVDWINNKLYLVETKVNRI
DVVNLEGNQRVTLITENLGHPRGIALDPTVGYLFFSDWGSLSGQPKVERAFMDGSNRKDL
VTTKVGWPAGITLDLVSKRVYWVDSRYDYIETVTYDGIQRKTVARGGSLVPHPFGISLFE
EHVFFTDWTKMAVMKASKFTETNPQVYHQSSLRPHGVTVYHALRQPNATNPCGSNNGGCA
QVCVLSHRTDNGGLGYRCKCEFGFELDDDEHRCVAVKNFLLFSSKTAVRGIPFTLSTQED
VMVPVTGSPSFFVGIDFDAQHSTVFYSDLSKDIIYKQKIDGTGKEVITANRLESVECLTF
DWISRNLYWTDGGLKSVTVLRLADKSRRQIISNLNNPRSIVVHPTAGYMFLSDWFRPAKI
MRAWSDGSHLMPIVNTSLGWPNGLAIDWSASRLYWVDAFFDKIEHSTLDGLDRKRLGHVD
QMTHPFGLTVFKDNVFITDWRLGAIIRVRKSDGGDMTVIRRGISSVMHVKAYDADLQTGS
NYCSQTTHANGDCSHFCFPVPNFQRVCGCPYGMKLQRDQMTCEGDPAREPPTQQCGSLSF
PCNNGKCVPSFFRCDGVDDCHDNSDEHQCGVFNNTCSPSAFACVRGGQCIPGQWHCDRQN
DCLDGSDEQNCPTHATSSTCPSTSFTCDNHVCIPKDWVCDTDNDCSDGSDEKNCQASGTC
QPTQFRCPDHRCISPLYVCDGDKDCADGSDEAGCVLNCTSAQFKCADGSSCINSRYRCDG
VYDCRDNSDEAGCPTRPPGMCHLDEFQCQGDGTCIPNTWECDGHPDCIHGSDEHTGCVPK
TCSPTHFLCDNGNCIYKAWICDGDNDCRDMSDEKDCPTQPFHCPSTQWQCPGYSTCINLS
ALCDGVFDCPNGTDESPLCSKFPDHSLLDTNLF
Download sequence
Identical sequences 10116.ENSRNOP00000043580 ENSRNOP00000043580

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