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Domain assignment for ENSRNOP00000044564 from Rattus norvegicus 69_3.4

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSRNOP00000044564
Domain Number 1 Region: 2-234
Classification Level Classification E-value
Superfamily Periplasmic binding protein-like I 2.2e-41
Family L-arabinose binding protein-like 0.0015
Further Details:      
 
Weak hits

Sequence:  ENSRNOP00000044564
Domain Number - Region: 254-300
Classification Level Classification E-value
Superfamily TNF receptor-like 0.073
Family TNF receptor-like 0.012
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSRNOP00000044564   Gene: ENSRNOG00000027704   Transcript: ENSRNOT00000042276
Sequence length 605
Comment pep:known chromosome:RGSC3.4:1:73113542:73130828:-1 gene:ENSRNOG00000027704 transcript:ENSRNOT00000042276 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MQKCTARVVLVFLSNSNFQLILHGLLAVPVSGQVWVSKGTLHMALALTVPGVFQVLQGTF
GLLYHSSRAIGFPEFLTHLSPSQTPEDMFIKKFWEFTFDCTWPYQNSTVTEGVQICSGNE
SLKNKPHPFPEVSKIDAAYTAVYSIAHALHDMVASAHQDGKGTNSQDFHHWQLLHALRKV
HFKTPDRSEIMFDANGDLVTKFDIFQGQKNPNGVFHLVHVGMIDPQASSGNKMMIQLKKD
LQVSSLNAEITVPPSICSESCLPGFSQVPRLGAPHCCFDCSPCPEGQFADQRDMKRCLLC
PKEQYSSNTRDHCLPRTEIFLAFEEPLGFILALMAILLAGLALLVLGVFLKHRDIPVVRA
NNRTLSYFLLISLSLCSLCSLLFLGRPTVTTCLLRQTTFAVVFTVAVSSVLAKTVTVVLA
FRVTKPGSRIQVCLSPGASTSVILIASLIQTVLCGVWLATSPPFPERDMISEPRHIVIQC
QEGSGATFFCVLGFLGFLAVGTFSVAFLARDLPDVFNETKFLTFSMLLFCSVWTAFLPLY
HSARGKSTVAVEIFSILASTDGLLCGIFIPKCYIILLKPEKNTPAWLRQGRCAHQDRQFS
MLHRR
Download sequence
Identical sequences D3ZUQ5
10116.ENSRNOP00000044564 NP_001092943.1.100692 NP_001092943.1.4139 ENSRNOP00000044564 ENSRNOP00000044564

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