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Domain assignment for ENSRNOP00000049950 from Rattus norvegicus 69_3.4

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSRNOP00000049950
Domain Number 1 Region: 65-507
Classification Level Classification E-value
Superfamily Periplasmic binding protein-like I 5.49e-110
Family L-arabinose binding protein-like 0.0013
Further Details:      
 
Weak hits

Sequence:  ENSRNOP00000049950
Domain Number - Region: 516-562
Classification Level Classification E-value
Superfamily TNF receptor-like 0.00221
Family TNF receptor-like 0.011
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSRNOP00000049950   Gene: ENSRNOG00000038873   Transcript: ENSRNOT00000048018
Sequence length 860
Comment pep:known chromosome:RGSC3.4:1:62336096:62379087:1 gene:ENSRNOG00000038873 transcript:ENSRNOT00000048018 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MLFSWTFISCFLQIPILVCSYTSSECLVRMNYRIHGEGNVVIIGYFPAYAIYPLNKTTDW
RMLKFNRDFMVEIKLKNYQCILAMMFAIEEINNNPYLLPNTSLGFEVNNISQGQRYTLAN
VFRSLSTSACVDLNYRNAHESNFAAVLTGPSWAISEYIGTLLDLYKFPQLTFGPFDSLQS
EQRRFSSLYQVAPKDTFLTLGIVSLMLHFHWIWVGLFIIDDDKGAQTLSDLRSEMDKNGV
CTAFVEMIVVTRGSFFTKSWKNQVQILESSSNVIIIHGDSDSLLSLIVNIKQKLLTWKVW
VLISQWDVSKFDDYFMVDSLHGALIFSHHREDIPNFTDFMQKSNPSKYPEDTYLHVLWHI
FFNCSFVNTDCKIVHNCLPNASLGFLPGNIFDMAMSEESYNVYNAVYAVAHSLHEMILNQ
VQFQTHEKGKKMVFFPWQLHPYLRKTLFNQDEVNEVLDWKRKSHVEYDILNFWNFPKGLG
LNVKVGTFSPSAPKNQKLSISSNMIQWATGPAEIPQSVCSESCHPGFRKMHKEGIVACCF
DCTPCPENEISNETDMDQCVKCPESHYGDTDKIHCLQKTVTFLAYGDPWGKTLCFLSLGF
SSLTAAVLGVFLKNRDTPIVKANNLPLSYTLLITLMLCFLCPLLFIGHPSTASCILQQNI
FGLLFTMALSTVLAKSITVVLAFKITAAGRIRRWLLISRAPNFIIPLCTLLQVFLSAIWL
TTSPPFVDKDAHSEHGHIIIICNKGSAIAFHCTLGYLGALALASYFMAFLSRNLPDTFNE
AKFLAFSMLVFCSVWVTFLPVYHSTKGKVTVAMEVFSILASSTSLLGIIFVPKCYLILLR
PERNSLNYIREKSYARRKKP
Download sequence
Identical sequences ENSRNOP00000049950 NP_001092952.1.100692 NP_001092952.1.4139 10116.ENSRNOP00000049950

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