SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSRNOP00000061285 from Rattus norvegicus 69_3.4

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSRNOP00000061285
Domain Number 1 Region: 26-81
Classification Level Classification E-value
Superfamily TNF receptor-like 0.0000000000512
Family TNF receptor-like 0.0051
Further Details:      
 
Domain Number 2 Region: 80-119
Classification Level Classification E-value
Superfamily TNF receptor-like 0.000000565
Family TNF receptor-like 0.002
Further Details:      
 
Weak hits

Sequence:  ENSRNOP00000061285
Domain Number - Region: 119-149
Classification Level Classification E-value
Superfamily TNF receptor-like 0.000188
Family TNF receptor-like 0.0076
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSRNOP00000061285   Gene: ENSRNOG00000043486   Transcript: ENSRNOT00000066943
Sequence length 191
Comment pep:known chromosome:RGSC3.4:1:203987420:204004049:-1 gene:ENSRNOG00000043486 transcript:ENSRNOT00000066943 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MMGKLKTLLLPGLLLWVFKVSSTTQCESNEFKHENFCCQLCPAGTHLINPCHRNRGESEC
APCQAQHFIDVNNREPVCSRCSKCRDDQEEVSECSSTADRKCWCKQGTYCDSENCLEMCH
DCSSCPEGRVIQECNATMDTVCDSKQGLSGHSPELWVILVSIAAAIATVAIAAAGVIAFI
RYSRHKKGEMI
Download sequence
Identical sequences D4A5X9
NP_001101981.1.100692 NP_001101981.1.4139 ENSRNOP00000061285 ENSRNOP00000061285 10116.ENSRNOP00000061285

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]