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Domain assignment for ENSRNOP00000013805 from Rattus norvegicus 69_3.4

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSRNOP00000013805
Domain Number 1 Region: 21-500
Classification Level Classification E-value
Superfamily Periplasmic binding protein-like I 3.7e-107
Family L-arabinose binding protein-like 0.0000136
Further Details:      
 
Weak hits

Sequence:  ENSRNOP00000013805
Domain Number - Region: 523-571
Classification Level Classification E-value
Superfamily TNF receptor-like 0.0141
Family TNF receptor-like 0.037
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSRNOP00000013805   Gene: ENSRNOG00000030104   Transcript: ENSRNOT00000013805
Sequence length 890
Comment pep:known chromosome:RGSC3.4:2:154483795:154519106:-1 gene:ENSRNOG00000030104 transcript:ENSRNOT00000013805 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
VTCRLLRKFNLTGYVDSENHSMVIGGLFPVHYRTIPKIDPVFLILIELQAQSRLFLSRFN
FRGFRWMKTMIHTIKEINERKDILPNHTLGYQIFDTCFSISKTVESTFVFLTGQEEYKPN
FRNSSGKYLAGIIGSGGSSLSVASSRILEVYYMRFQVGYTSSSSILSDHFRFPTFYRTIP
SDKIQTEAMVNLIKHFGWVWVGAIAADDDYGKYGIKSFKEKLERSNLCVAFSETIPKVYS
NEKMQKAINAVKSSTAKVVVLYATDIDLRPFVLEVVHHNITDRTWIASEAWITSALIAKP
EYFPYFGGTIGFAIPRSVIPGLKEFLYDVHPSKDPNDVLTIEFWQTAFNCTWPNSSVPYN
VDYRGNMTGKEDRFYAMSDRLCTGEEKLEDLKNTYLDTSQLRITNNVKQAVYLLAHALDR
LSRSVVFDRKEYINNPKFLIFLVYSLMIYIMRMEFTTHDGRKIELDRSGDVKNGYYDILN
WQMDDAGEIAFVKFGEYKFTSSKYELVLSKNSTLFWNTESSELPDSFCTKLCPPGTRKGI
RQGKPTCCFDCIPCADGYVSEKPGQRECDPCSEDDWSNAEKSKCVPKLVEFLSYEEALGF
TLVILSIFGALVVMAVTVVYVIHRHTPLVKANDRELSFFIQMSLVITVLSSMLFIGKPCN
WSCMARQVTLALGFCLCLSSILGKTISLFFAYRISKSKTRLISMHPIFRKLIVLICVVGE
IGVCTAYLVLEPPRMFKNIEPQNVKIIFECNEGSIEFLYSIFGFNVLLALLCFLTTFVAR
QLPDNYYEGKCITFGMLVFFIVWISFVPAYLSTKGKFKVAVEIFAILASSYGLLGCVFLP
KCFIILLRPKRNTDETVGGRVPTLDKSIQLTSASVSSELNNTAESIVLDE
Download sequence
Identical sequences ENSRNOP00000013805 10116.ENSRNOP00000013805

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