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Domain assignment for ENSRNOP00000055361 from Rattus norvegicus 69_3.4

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSRNOP00000055361
Domain Number 1 Region: 109-202
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 2.93e-36
Family SCAN domain 0.0000083
Further Details:      
 
Domain Number 2 Region: 707-763
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 2.37e-24
Family Classic zinc finger, C2H2 0.0045
Further Details:      
 
Domain Number 3 Region: 437-494
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.02e-22
Family Classic zinc finger, C2H2 0.0064
Further Details:      
 
Domain Number 4 Region: 650-707
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.08e-22
Family Classic zinc finger, C2H2 0.0064
Further Details:      
 
Domain Number 5 Region: 595-651
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 2.49e-22
Family Classic zinc finger, C2H2 0.0047
Further Details:      
 
Domain Number 6 Region: 479-531
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.95e-17
Family Classic zinc finger, C2H2 0.0076
Further Details:      
 
Domain Number 7 Region: 752-804
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 5.94e-17
Family Classic zinc finger, C2H2 0.012
Further Details:      
 
Domain Number 8 Region: 557-608
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.000000000000609
Family Classic zinc finger, C2H2 0.0041
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSRNOP00000055361   Gene: ENSRNOG00000027550   Transcript: ENSRNOT00000058563
Sequence length 807
Comment pep:known chromosome:RGSC3.4:1:72870145:72881239:1 gene:ENSRNOG00000027550 transcript:ENSRNOT00000058563 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MRSTKHVAHIEFQRDSGECLFPQMFSSWRRRITTACALGKHSLPLAVLTSHASYYSFPRD
RHWPQRPDLVLLMKPIVPDSSGRAPPENEPAVVKLEDSDNYDKREDTLWDPGPEAARLRF
RCFRYEEAIGPQEALAQLRELCHQWLRPEVHSKEQILELLVLEQFLGALPSEIQARVQEQ
WPGSPEEAAALVDRLRWELDGPRKWVTVQVQGKEVLSEKMEPSSFQPRPQVKLQTPEAGS
ETTPGATQELPLDLQMKEETELMENPELLESEPLSAAQEAAATLLPKVAQGHGIALDQTS
PHSDTEPDVPPWSEDPMPLWHEEVEGILSPGFTLQMDSITAEPDTVSPHLHVPWDLDMAS
LSGQMQSPTREGGFAHALVLPSDPGSEQDPACEDPCPSVGPALVATRWHAPRDRSQGHPS
TGTGVMRGGRCDVCGKVFSQRSNLLRHQKIHTGERPFVCGECGRSFSRSSHLLRHQLTHT
EERPFVCRDCGQGFVRSARLEEHRRVHTGEQPFRCAECGQSFRQRSNLLQHQRIHGDPPG
PAPPVRSLAGVPEPPGPFPCSECCESFPRRAVLLEHQAVHTGDKSFGCVECGERFGRRSV
LLQHRRVHSGERPFACAECGQSFRQRSNLTQHRRIHTGERPFACTECGKAFRQRPTLTQH
LRVHTGEKPFACPECGQRFSQRLKLTRHQRTHTGEKPYRCSECGLGFTQVSRLTEHQRIH
TGERPFACPECGQSFRQHANLIQHRRIHTGERPYACPECGKAFRQRPTLTQHLRTHRREK
PFACQDCGRRFHQSTKLIQHQRIHSTE
Download sequence
Identical sequences 10116.ENSRNOP00000035470 ENSRNOP00000055361

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