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Domain assignment for ENSRNOP00000059514 from Rattus norvegicus 69_3.4

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSRNOP00000059514
Domain Number 1 Region: 44-134
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 1.65e-38
Family SCAN domain 0.0000487
Further Details:      
 
Domain Number 2 Region: 350-407
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 2.99e-26
Family Classic zinc finger, C2H2 0.0031
Further Details:      
 
Domain Number 3 Region: 394-454
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.62e-20
Family Classic zinc finger, C2H2 0.0054
Further Details:      
 
Domain Number 4 Region: 312-364
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 3.28e-18
Family Classic zinc finger, C2H2 0.0047
Further Details:      
 
Domain Number 5 Region: 480-530
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.49e-17
Family Classic zinc finger, C2H2 0.0069
Further Details:      
 
Domain Number 6 Region: 210-255
Classification Level Classification E-value
Superfamily KRAB domain (Kruppel-associated box) 0.000000209
Family KRAB domain (Kruppel-associated box) 0.0067
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSRNOP00000059514   Gene: ENSRNOG00000031679   Transcript: ENSRNOT00000068715
Sequence length 554
Comment pep:known chromosome:RGSC3.4:17:50876821:50877465:1 gene:ENSRNOG00000031679 transcript:ENSRNOT00000068715 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MARESRESTTLDSHSAEDQMELLVIKVEQEEVSPLAEETSWLGSPGPDRSRQRFRAFRYP
DAAGPRQALSRLRELCRQWLRPDMHSKEQILELLVLEQFLTILPGELQAWVREQHPDSGE
EVVALLEYLDRQLDETPPQVPDDDDGQELLCSKAVLLTSAQGSESSQMESMEPLLKQESL
GSLPSEVRVVTQAGHCGEDGVTATRLTSELQGLLKMEDVAPGLSPRWTEQDSSQMNLYKD
EMQENSGSLVSLDENMQTKVRDLPPAEENTEQKPEQTVCFLGEDTVQIPTGTEASEQEGK
LQTTQKNATGNRRFYCRECGKSFAQSSGLSKHKRIHTGLKPYECEECGKAFIGSSALIIH
QRVHTGEKPYECEECGKAFSHSSDLIKHQRTHTGEKPYECDDCGKTFTQSCSLLEHHRIH
TGEKPYQCNMCPKAFRRSSHLLRHQRTHTGDKDFFVPEPYWESQSRVESHWENIETPVSY
QCNDCERSFSRITSLIEHQKVHTGEKPFECQTCGKGFTRPSYLIQHQRRHTGKKTSVTVT
PAVHSEVGVQLSLN
Download sequence
Identical sequences Q5FVP7
ENSRNOP00000059514 10116.ENSRNOP00000024783

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