SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 10116.ENSRNOP00000010869 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  10116.ENSRNOP00000010869
Domain Number 1 Region: 610-890
Classification Level Classification E-value
Superfamily WD40 repeat-like 1.02e-59
Family WD40-repeat 0.00035
Further Details:      
 
Domain Number 2 Region: 930-994,1036-1246
Classification Level Classification E-value
Superfamily WD40 repeat-like 8.06e-44
Family WD40-repeat 0.00059
Further Details:      
 
Domain Number 3 Region: 108-367
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 1.11e-42
Family RecA protein-like (ATPase-domain) 0.057
Further Details:      
 
Domain Number 4 Region: 1-92
Classification Level Classification E-value
Superfamily DEATH domain 7.06e-21
Family Caspase recruitment domain, CARD 0.0000114
Further Details:      
 
Weak hits

Sequence:  10116.ENSRNOP00000010869
Domain Number - Region: 431-486
Classification Level Classification E-value
Superfamily Cdc48 domain 2-like 0.0425
Family Cdc48 domain 2-like 0.01
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) 10116.ENSRNOP00000010869
Sequence length 1249
Comment (Rattus norvegicus)
Sequence
MDAKARNCLLQHKEALEKDIKTSYIMDHMISNGVLTVVEEEKVKSQATQYQRAAALIKMI
LNKDNYAYISFYNALLHEGYKDLAGLLHSGLPLVSSSSGKDTDGGNTSFVRTVLCEGGVP
QRPVIFVTRKKLVSAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHALLEGCFSG
GVHWVSIGKQDKSGLLMKLQNLCTRLGQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLL
ILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKYVIPVESGLGKEKGLEILSLFVN
MKKEDLPVEAHSIIKECKGSPLVVSLVGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYD
YEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVN
KSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQLQDLHRKMVTQFQRYHQPHTLSPGQEDC
MYWYNFLAYHMASAGMHKELCALMFSLDWIKAKTELVGPAHLIHEFVEYRHILDEKDCAV
CENFQEFLSLNGHLLGRQPFPNIVQLGLCEPETSEVYQQAKLQAKQEVDTGRLYLEWINK
KTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEV
LCCAFSSDDSYIATCSVDKKVKIWDSGTGKLVHTYEEHSEQVNCCHFTNKSNHLLLATGS
NDSFLKLWDLNQKECRNTMFGHTNSVTHCRFSPDDELLASCSADGTLKLWDVRSANEKKS
INVKRFFLSSEDPPEDVEVIVKCCSWSADGDRIIVAAKNKVLLCDVEKTLYFPEAHGVKQ
HSKVAHVDFCPFDNLMVLMSSSLCLNLHHLKNSPRHFDCRAHNSLIHNISGMTDSTQLFL
VPLSLTQVWETRKVCKNSAIVLKQEIDVVFQENEMMVLAVDNIRGLQLIAGKTGQIDYLP
EAQVSCCCLSPHLEYVAFGDEEGAIKVLSSTNSRVQSEGVGLKKLCTHVHFTGDTCGLIN
YSEESVLSCVEWQTEEYVFLQAHQETVKDFRLLRDSRCFPGSFDGTVKVWNVITGRIERD
FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFELPSPLHELKGHNSCVRCSAFSLDGI
LLATGDDNGEIRIWNVSDGQLLHLCAPISIEEGTATHGGWVTDVCFSPDRKMLVSAGGYL
KWWNVVTGESSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVLE
Download sequence
Identical sequences 10116.ENSRNOP00000010869 ENSRNOP00000010869

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]