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Domain assignment for 110662.Syncc9605_0336 from STRING v9.0.5

Domain architecture


Domain assignment details

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Strong hits

Sequence:  110662.Syncc9605_0336
Domain Number 1 Region: 299-497
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB transmembrane domain 6.41e-43
Family Multidrug efflux transporter AcrB transmembrane domain 0.0000261
Further Details:      
 
Domain Number 2 Region: 811-1034
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB transmembrane domain 5.49e-40
Family Multidrug efflux transporter AcrB transmembrane domain 0.0000235
Further Details:      
 
Domain Number 3 Region: 568-673
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 9.42e-21
Family Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 0.0011
Further Details:      
 
Domain Number 4 Region: 42-131
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 9.59e-20
Family Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 0.0003
Further Details:      
 
Domain Number 5 Region: 137-183,277-331
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 2.04e-19
Family Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 0.0035
Further Details:      
 
Domain Number 6 Region: 186-273
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 0.00000000000000262
Family Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 0.00078
Further Details:      
 
Domain Number 7 Region: 726-810
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 0.0000000000000432
Family Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 0.0011
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 110662.Syncc9605_0336
Sequence length 1036
Comment (Synechococcus CC9605)
Sequence
MRSISQPFLRRPVLTVVCSLLILLAGCTALFGLGLEDLPPLAPTRVSVSANFPAASPEVV
EQSVTRVLEQQLNGLEGVESISSTSRQGGASISLHFKTGDPELNAIKVQNEVNLASRRLP
QAVTRQGLQVRRSSEDLLMILGFSHPLDQYVPTFLTGWLDQTLRDELLTTPGIGDVQIFG
SSELSFRLWLDPQRLEQTNLTLGEVSRALAEQNVLAAIGSIGAAPVPAGQVLSLPVEAEG
RLRSQSDFENLVLRRLDNGGLLRLKDVGRVALGQRNYGREAMNLAGERSVAVGVYQRDGA
NALDVSRAIKRKLQQLEASFPPGIELSMIVDVADTVQANLDRTFITLRDAVLLVLVVLVL
FLGRWRLALIPGLAVPVALVGSLSLVKLSGSNLNSLILFGLVLATGIVVDDAIVVSEDIA
GRIERGTPPEQAAEDAMAELATAVVATSLVLAAVFLPVLLIPGSIGRLYQPIALAISGAI
LFSTLNALSFTPMACARVLGPGGGRLPGAIGKLSRWLRHGMQTLQSQYSKQLEHWLQRRR
RIALVLLSGLVITASGLAVMPTAFIPDDDQGQIRGYFTLPDGASLERSMAVMDDIRRVVS
EEPQVRTGNFYAGSSFGQSGEDRGSFYLRLQPLKDRPGKEQSSNAIKGRLNRKIQQRIGD
ARVVLITPPTVRGFSSESGLSLELLDRSGGQFSLEQFGQVAQDFIQTAKATERFERVSTR
FDASFPRWRLELNRDQLAALDLDYGATLREIGTAFGGSYIDDTYDDGRIRSIVLQLDGRE
RRRPEDLTGLMVRNRSGELVSVASVASLTREEGVNNIRHFGLNRAIRITAIPAPTVSSGE
AIDALTQAGDRIGGSNIDLAFTGLALEEQRAGQVTWVLFALGVTVVYLLLAALYESFIDP
LIILLTVPLALLGALIGLKLRGLPLDVYGQMGLLVLVSLAAKNGILIVEFANQRIAAGLP
LHEATVVAAVNRMRPILLTAITSLAGFLPLLFAQGTGAASRISIGTVVFSGLLVASLLSL
YVVPTVYLLLKRWRSA
Download sequence
Identical sequences Q3AMS0
gi|78211888|ref|YP_380667.1| 110662.Syncc9605_0336 WP_011363360.1.53453

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