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Domain assignment for 1140.Synpcc7942_2440 from STRING v9.0.5

Domain architecture


Domain assignment details

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Strong hits

Sequence:  1140.Synpcc7942_2440
Domain Number 1 Region: 302-496
Classification Level Classification E-value
Superfamily Ribosomal protein S5 domain 2-like 2.23e-47
Family Ribonuclease PH domain 1-like 0.00000625
Further Details:      
 
Domain Number 2 Region: 4-142
Classification Level Classification E-value
Superfamily Ribosomal protein S5 domain 2-like 1.52e-44
Family Ribonuclease PH domain 1-like 0.0000198
Further Details:      
 
Domain Number 3 Region: 459-557
Classification Level Classification E-value
Superfamily Ribonuclease PH domain 2-like 5.5e-28
Family Ribonuclease PH domain 2-like 0.0000798
Further Details:      
 
Domain Number 4 Region: 143-227
Classification Level Classification E-value
Superfamily Ribonuclease PH domain 2-like 1.83e-26
Family Ribonuclease PH domain 2-like 0.0015
Further Details:      
 
Domain Number 5 Region: 564-649
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 3.45e-22
Family Eukaryotic type KH-domain (KH-domain type I) 0.0027
Further Details:      
 
Domain Number 6 Region: 622-702
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 8.21e-19
Family Cold shock DNA-binding domain-like 0.00049
Further Details:      
 
Domain Number 7 Region: 237-329
Classification Level Classification E-value
Superfamily Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.0000000000000251
Family Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.0023
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) 1140.Synpcc7942_2440
Sequence length 716
Comment (Synechococcus elongatus PCC 7942)
Sequence
MPQLSKSLSFDGRDIRLELGLFAPQAGGSVLISSGDTAVLVAATRSTAREGIDFLPLTVD
YEERMYAAGRIPGGFLRREGRPPERATLTSRLIDRPLRPLFPSWLRDDLQVVATTLSMDE
TVPPDVLAVTGASIATLVAKIPFYGPMAAVRVGLVGDDFIINPTYREIEKGDLDLVVAGT
PAGVIMVEAGANQLPEADVIEAIDFGYEAVQELIKAQQSLLAELGIEQILPEAPNADNTL
ENFVRDRASSGVQQVLQHFSFTKSERDAALDEVKASVVEAIAALPEEDPVRSVTAAEPKA
LGNTFKALTKTLMRQQILRDGVRVDGRKLDQVRPISSQVGLLPPRVHGSGLFQRGLTQVL
SIATLGTPGDAQELDDLHPDTQKRYLHHYNMPPYSVGETRPMRSPGRREIGHGALAERAL
LPVLPSKEEFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPIKKPVSGAAMGLIRE
GDEYRVLTDIQGIEDFLGDMDFKVAGTDQGITALQMDMKIHGLPLEIIADAINQAKPARL
HILNKMLEAIATPRADLSTYAPRLFRIQINPEQIGLVIGPGGKTIRSITEQTGAKIDIED
TGAVTISAVDADSALRAKSIIEGMTRTITAGDVYIGKVTRIIPIGAFVEFLPGKEGMIHI
SQIADYRVARVEDELTVGDEVVVKVREIDQKGRVNLTRKGIDPEEVSAARAAVEAS
Download sequence
Identical sequences Q31KE9
WP_011378463.1.45845 WP_011378463.1.95485 1140.Synpcc7942_2440 gi|81301249|ref|YP_401457.1|

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