SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 164328.JGI78600 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  164328.JGI78600
Domain Number 1 Region: 316-404
Classification Level Classification E-value
Superfamily Metalloproteases ("zincins"), catalytic domain 0.0000838
Family Matrix metalloproteases, catalytic domain 0.07
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 164328.JGI78600
Sequence length 413
Comment (Phytophthora ramorum)
Sequence
MQTRRTSRISAPAVLIVALLALAASTSVTSAAKCFYSKSTSTPSPVSTSAPDVTEAPILE
DPTPTQTDSFGASQATDGSSFQTQSSTEASATQSGSYEATQTSEDSSNAAQSATEGSFES
NEVAQGSSSPTQGSSSESTGAVPSTTSSGVHATFGDITSATGKCVIGDPNADLTREDVDW
VWKNTMEEYVPQFKNLIFDQLVTNNGSLSYCVRWDNDLKLTKSVASKFQAMIEKQINLWN
RWLVGYNCWPIEKIDITVVGFAVRDKSIMDWSDDSLGTIYEGILDAEGSPQCPDECYKHK
GQAASADTSACKGKPFDMSLWPSTKPGDGAIGTGGDWGQRVEVNDMLGAMDNEEMVVLLH
EMGHGFGLPEMYVAENKPSGYPACVMDESLTLTDGDGWLVRSILEKIKSRYDF
Download sequence
Identical sequences H3GPG6
jgi|Phyra1_1|78600|fgenesh1_pg.C_scaffold_33000010 164328.JGI78600

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]