SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 195102.CPE1680 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  195102.CPE1680
Domain Number 1 Region: 289-486
Classification Level Classification E-value
Superfamily Ribosomal protein S5 domain 2-like 4.05e-47
Family Ribonuclease PH domain 1-like 0.0000197
Further Details:      
 
Domain Number 2 Region: 6-142
Classification Level Classification E-value
Superfamily Ribosomal protein S5 domain 2-like 1.87e-41
Family Ribonuclease PH domain 1-like 0.000023
Further Details:      
 
Domain Number 3 Region: 447-548
Classification Level Classification E-value
Superfamily Ribonuclease PH domain 2-like 3.79e-25
Family Ribonuclease PH domain 2-like 0.00014
Further Details:      
 
Domain Number 4 Region: 136-228
Classification Level Classification E-value
Superfamily Ribonuclease PH domain 2-like 1.03e-24
Family Ribonuclease PH domain 2-like 0.0047
Further Details:      
 
Domain Number 5 Region: 606-691
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 2.23e-20
Family Cold shock DNA-binding domain-like 0.00037
Further Details:      
 
Domain Number 6 Region: 551-628
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 3.37e-16
Family Eukaryotic type KH-domain (KH-domain type I) 0.0047
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) 195102.CPE1680
Sequence length 702
Comment (Clostridium perfringens)
Sequence
MNHTHETIIAGRPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVE
YEERLYSVGKIPGGFIKREGKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVEN
DNLPEILAINAASMALCLSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESSLQLTVCAT
KERVMMIEAGGDEIPEDTMINAIKFGFDKCQDIIKFQEEAVSMFGKEKKVPELHKVPEEI
EEAVREFAFDMISESMHITDRDERNAAMDEVKAKINEEFEEKYPDNMSDIGEAVYDMQKE
VVRHMLLKEGKRPDGRAFDQVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISEIQ
ILDGIGEEESKRYMHHYNFPAYSVGEVRPLRGPGRREIGHGALAERALEPLIPSEAEFPY
TIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSKDLTEEEVLTDI
QGLEDFFGDMDFKVAGTEEGITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKECI
PAPREEVSKYAPKTSTLQIDPEKIRDVIGAGGKVINKIIADTGVKIDIKEDGLVYVSSAE
SEGVKEAVKIIEGLTKEVKAGEIYLGKVTKIAQFGAFVEVLPNKEGLVHISKLDNKRVEK
VEDVVSVGDEILVKVTEIDSQGRINLSRKDAIKEAEEENKQQ
Download sequence
Identical sequences Q8XJS4
gi|18310662|ref|NP_562596.1| 195102.CPE1680 WP_003469153.1.100517 WP_003469153.1.22226 WP_003469153.1.23119 WP_003469153.1.27257 WP_003469153.1.32463 WP_003469153.1.39851

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]